Bootstrap build started on Mon Dec  4 13:11:50 2023
TMP=C:\Users\phaserbuilder\AppData\Local\Temp
COMPUTERNAME=AZIMUTH
VS140COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\Tools\
USERDOMAIN=AZIMUTH
DEFLOGDIR=C:\ProgramData\McAfee\Endpoint Security\Logs
PSMODULEPATH=C:\Program Files\WindowsPowerShell\Modules;C:\WINDOWS\system32\WindowsPowerShell\v1.0\Modules
COMMONPROGRAMFILES=C:\Program Files\Common Files
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 44 Stepping 2, GenuineIntel
PROGRAMFILES=C:\Program Files
PROCESSOR_REVISION=2c02
PATH=C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\WINDOWS\System32\OpenSSH\;C:\Utilities;C:\Program Files\TortoiseSVN\bin;C:\Program Files (x86)\NSIS\Unicode;C:\Program Files\Git\cmd;C:\Program Files\PuTTY\;C:\Program Files\TortoiseGit\bin;C:\Program Files\dotnet\;C:\Users\phaserbuilder\AppData\Local\Microsoft\WindowsApps;
SYSTEMROOT=C:\WINDOWS
PROGRAMFILES(X86)=C:\Program Files (x86)
COMSPEC=C:\WINDOWS\system32\cmd.exe
DRIVERDATA=C:\Windows\System32\Drivers\DriverData
GIT_SSH=C:\Windows\System32\OpenSSH\ssh.exe
TEMP=C:\Users\phaserbuilder\AppData\Local\Temp
COMMONPROGRAMFILES(X86)=C:\Program Files (x86)\Common Files
PROCESSOR_ARCHITECTURE=AMD64
ALLUSERSPROFILE=C:\ProgramData
LOCALAPPDATA=C:\Users\phaserbuilder\AppData\Local
FPS_BROWSER_USER_PROFILE_STRING=Default
HOMEPATH=\Users\phaserbuilder
USERDOMAIN_ROAMINGPROFILE=AZIMUTH
PROGRAMW6432=C:\Program Files
USERNAME=phaserbuilder
LOGONSERVER=\\AZIMUTH
PROMPT=$P$G
SESSIONNAME=Console
PROGRAMDATA=C:\ProgramData
ONEDRIVE=C:\Users\phaserbuilder\OneDrive
FPS_BROWSER_APP_PROFILE_STRING=Internet Explorer
PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC;.PY;.PYW
WINDIR=C:\WINDOWS
APPDATA=C:\Users\phaserbuilder\AppData\Roaming
HOMEDRIVE=C:
SYSTEMDRIVE=C:
NUMBER_OF_PROCESSORS=24
PROCESSOR_LEVEL=6
COMMONPROGRAMW6432=C:\Program Files\Common Files
OS=Windows_NT
PUBLIC=C:\Users\Public
USERPROFILE=C:\Users\phaserbuilder
Using compiler:


curl https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/phaser_regression/-/raw/master/MakeRegressionTestContents.py  > MakeRegressionTestContents.py
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  8384  100  8384    0     0  40902      0 --:--:-- --:--:-- --:--:-- 41504

None
curl https://raw.githubusercontent.com/cctbx/cctbx_project/master/libtbx/auto_build/bootstrap.py > bootstrap.py
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  103k  100  103k    0     0   413k      0 --:--:-- --:--:-- --:--:--  419k

None
"C:\Python27amd64\python.exe" bootstrap.py --builder=voyager --use_conda --verbose --python=27 --nproc=23

C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current\modules\phaser_regression\Current>((ROBOCOPY empty dist /MIR /COPYALL  1>nul )  & rmdir /S /Q dist\   & ) 
The system cannot find the file specified.

C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current\modules\phaser_regression\Current>((ROBOCOPY empty tests /MIR /COPYALL  1>nul )  & rmdir /S /Q tests\   & ) 

C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current\modules\phaser_regression\Current>((ROBOCOPY empty tmp /MIR /COPYALL  1>nul )  & rmdir /S /Q tmp\   & ) 
The system cannot find the file specified.
Already up to date.
Performing actions: hot update base build
Installing base packages using:
  C:\Python27amd64\python.exe modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=voyager --install_conda --python=27
===== Running in .: deleting dist, tests, tmp
Existing non-git directory -- don't know what to do. skipping: scons
===== Running in modules\annlib: git pull --rebase
Traceback (most recent call last):
  File "bootstrap.py", line 3077, in <module>
    run()
  File "bootstrap.py", line 3072, in run
    no_boost_src=options.no_boost_src,
  File "bootstrap.py", line 1273, in run
    i.run()
  File "bootstrap.py", line 1549, in run
    use_ssh=use_git_ssh, verbose=True, reference=reference_repository_path)
  File "bootstrap.py", line 487, in git
    if not open(os.path.join(destination, '.git', 'HEAD'), 'r').read().startswith('ref:'):
IOError: [Errno 2] No such file or directory: 'modules\\cctbx_project\\.git\\HEAD'

None