Bootstrap build started on Mon Jun 28 00:00:03 2021
LANG=en_GB.UTF-8
SHELL=/bin/sh
LANGUAGE=en_GB:en
SHLVL=1
OLDPWD=/home/phaserbuilder
QT_QPA_PLATFORMTHEME=appmenu-qt5
XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop
PWD=/home/phaserbuilder/PhaserNightlyBuild
LOGNAME=phaserbuilder
HOME=/home/phaserbuilder
PATH=/usr/bin:/bin:/snap/bin
_=/usr/bin/python
Using compiler:

g++ (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
curl https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/phaser_regression/-/raw/master/MakeRegressionTestContents.py  > MakeRegressionTestContents.py
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curl https://raw.githubusercontent.com/cctbx/cctbx_project/master/libtbx/auto_build/bootstrap.py > bootstrap.py
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"/usr/bin/python" bootstrap.py --builder=phaser base hot update --use_conda --verbose --python=27 --nproc=7
Current branch master is up to date.
From https://github.com/cctbx/cctbx_project
   2c2b812..47c8cf1  diffBragg_to_master -> origin/diffBragg_to_master
Current branch master is up to date.
Writing files containing version information for cctbx_project
===============================================================================
Wrote /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/../../cctbx_project/cctbx_version.txt
Wrote /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/../../cctbx_project/cctbx_version.h
Wrote /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/../../cctbx_project/setup.py
===============================================================================
Current branch master is up to date.
Current branch master is up to date.
Current branch master is up to date.
Current branch master is up to date.

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Location of conda installation not provided
Proceeding with a fresh installation
Using local copy at /home/phaserbuilder/PhaserNightlyBuild/Current/Miniconda3-latest-Linux-x86_64.sh
Installing miniconda to "/home/phaserbuilder/PhaserNightlyBuild/Current/mc3"
Base conda installation:
  /home/phaserbuilder/PhaserNightlyBuild/Current/mc3
Installing phaser environment with:
  /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/auto_build/conda_envs/cctbx_py27_linux-64.txt
Completed installation into:
  /home/phaserbuilder/PhaserNightlyBuild/Current/conda_base
Performing actions: hot update base
Installing base packages using:
  python modules/cctbx_project/libtbx/auto_build/install_conda.py --builder=phaser --install_conda --python=27
Existing non-git directory -- don't know what to do. skipping: scons
===== Running in modules/boost: git pull --rebase
===== Running in modules/cctbx_project: git pull --rebase
===== Running in modules/cctbx_project: python libtbx/version.py
Existing non-git directory -- don't know what to do. skipping: ccp4io
Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx
Existing non-git directory -- don't know what to do. skipping: annlib
===== Running in modules/annlib_adaptbx: git pull --rebase
Existing non-git directory -- don't know what to do. skipping: eigen
Existing non-git directory -- don't know what to do. skipping: tntbx
===== Running in modules/phaser_regression: git pull --rebase
===== Running in modules/phaser: git pull --rebase
===== Running in modules/reduce: git pull --rebase

  removing .pyc files in /home/phaserbuilder/PhaserNightlyBuild/Current/modules, walk? True
  removed 534 files
===== Running in .: base

Bootstrap success: hot, update, base

None
"/usr/bin/python" bootstrap.py --builder=phaser build --use_conda --verbose --python=27 --nproc=7
Python: 2.7.15 "/home/phaserbuilder/PhaserNightlyBuild/Current/build/../conda_base/bin/python"
Compiler: default
Build mode: release
Warning level: 0
Precompiled Headers: False
Static libraries: False
Static exe: False
Scan Boost headers: False
Write full flex_fwd.h files: False
Build Boost.Python extensions: True
Define BOOST_PYTHON_NO_PY_SIGNATURES: False
Define BOOST_PYTHON_BOOL_INT_STRICT: True
Enable OpenMP if possible: True
Boost threads enabled: True
Enable CUDA: False
Use conda: True
Use opt_resources if available: False
Use environment flags: False
Enable C++11: False
command_version_suffix: None
Relocatable paths anchored at: /home/phaserbuilder/PhaserNightlyBuild/Current/build
Top-down list of all modules involved:
  phaser_regression  "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression"
  phaser             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser"
  tntbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx"
  mmtbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx"
  reduce             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce"
  iotbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx"
  ccp4io+adaptbx     "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io"
                     "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io_adaptbx"
  smtbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx"
  ucif               "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif"
  crys3d             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/crys3d"
  cctbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx"
  scitbx             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx"
  fable              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable"
  omptbx             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/omptbx"
  boost+adaptbx      "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost"
                     "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx"
  tbxx               "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/tbxx"
  chiltbx            "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/chiltbx"
  libtbx             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx"
Creating files in build directory: "/home/phaserbuilder/PhaserNightlyBuild/Current/build"
    dispatcher_include_template.sh
    dispatcher_head.sh
    setpaths.sh
    setpaths.csh
    setpaths_all.sh
    setpaths_all.csh
    setpaths_debug.sh
    unsetpaths.sh
    setpaths_debug.csh
    unsetpaths.csh
    SConstruct
    Makefile
    run_tests.csh
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/crys3d/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/phaser/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/libtbx_refresh.py"
  Generating C++ header files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/scitbx/array_family"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/scitbx/array_family/boost_python"
  Using fable to convert scitbx/lbfgs.f
Updating entry points for scitbx
  1 entries for entry point pytest_randomly.random_seeder
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/libtbx_refresh.py"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/cctbx/eltbx"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/cctbx/boost_python"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/crys3d/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/libtbx_refresh.py"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/smtbx/boost_python"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/libtbx_refresh.py"
  Using fable to convert iotbx/pdb/hybrid_36_f.f
    Writing: iotbx/pdb/hybrid_36_fem.cpp
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/libtbx_refresh.py"
Done.
Base conda installation:
  /home/phaserbuilder/PhaserNightlyBuild/Current/mc3
conda_setpaths.sh has been written successfully.
conda_unsetpaths.sh has been written successfully.
conda_setpaths.csh has been written successfully.
conda_unsetpaths.csh has been written successfully.
scons: Reading SConscript files ...
libtbx.scons: OpenMP is available.
BOOST_VERSION: 107000
libtbx.scons: implicit dependency scan disabled for directory /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost
  Ignored: [Errno 2] No such file or directory: '/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe_dev/cctbx.getting_started'
  Ignored: [Errno 2] No such file or directory: '/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe_dev/cctbx.sym_equiv_sites'
  Ignored: [Errno 2] No such file or directory: '/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe_dev/cctbx.convert_ccp4_symop_lib'
  Ignored: [Errno 2] No such file or directory: '/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe_dev/cctbx.lattice_symmetry'
  Ignored: [Errno 2] No such file or directory: '/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe_dev/cctbx.find_distances'
  Ignored: [Errno 2] No such file or directory: '/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe_dev/cctbx.sys_abs_equiv_space_groups'
phaser: Distributed version
phaser: Generating C++ and libtbx.phil defaults files
phaser: Building shared version
  Ignored: [Errno 2] No such file or directory: '/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe/phaser'
scons: done reading SConscript files.
scons: Building targets ...
g++ -o boost/libs/filesystem/src/codecvt_error_category.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/filesystem/src/codecvt_error_category.cpp
g++ -o boost/libs/filesystem/src/operations.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/filesystem/src/operations.cpp
g++ -o boost/libs/filesystem/src/path.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/filesystem/src/path.cpp
g++ -o boost/libs/filesystem/src/path_traits.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/filesystem/src/path_traits.cpp
g++ -o boost/libs/filesystem/src/portability.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/filesystem/src/portability.cpp
g++ -o boost/libs/filesystem/src/unique_path.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/filesystem/src/unique_path.cpp
g++ -o boost/libs/filesystem/src/utf8_codecvt_facet.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/filesystem/src/utf8_codecvt_facet.cpp
g++ -o boost/libs/python/src/converter/arg_to_python_base.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/converter/arg_to_python_base.cpp
g++ -o boost/libs/python/src/converter/builtin_converters.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/converter/builtin_converters.cpp
g++ -o boost/libs/python/src/converter/from_python.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/converter/from_python.cpp
g++ -o boost/libs/python/src/converter/registry.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/converter/registry.cpp
g++ -o boost/libs/python/src/converter/type_id.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/converter/type_id.cpp
g++ -o boost/libs/python/src/dict.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/dict.cpp
g++ -o boost/libs/python/src/errors.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/errors.cpp
g++ -o boost/libs/python/src/exec.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/exec.cpp
g++ -o boost/libs/python/src/import.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/import.cpp
g++ -o boost/libs/python/src/list.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/list.cpp
g++ -o boost/libs/python/src/long.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/long.cpp
g++ -o boost/libs/python/src/module.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/module.cpp
g++ -o boost/libs/python/src/numpy/dtype.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_NUMPY_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/numpy/dtype.cpp
g++ -o boost/libs/python/src/numpy/matrix.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_NUMPY_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/numpy/matrix.cpp
g++ -o boost/libs/python/src/numpy/ndarray.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_NUMPY_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/numpy/ndarray.cpp
g++ -o boost/libs/python/src/numpy/numpy.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_NUMPY_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/numpy/numpy.cpp
g++ -o boost/libs/python/src/numpy/scalars.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_NUMPY_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/numpy/scalars.cpp
g++ -o boost/libs/python/src/numpy/ufunc.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_NUMPY_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/numpy/ufunc.cpp
g++ -o boost/libs/python/src/object/class.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/class.cpp
g++ -o boost/libs/python/src/object/enum.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/enum.cpp
g++ -o boost/libs/python/src/object/function.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/function.cpp
g++ -o boost/libs/python/src/object/function_doc_signature.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/function_doc_signature.cpp
g++ -o boost/libs/python/src/object/inheritance.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/inheritance.cpp
g++ -o boost/libs/python/src/object/iterator.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/iterator.cpp
g++ -o boost/libs/python/src/object/life_support.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/life_support.cpp
g++ -o boost/libs/python/src/object/pickle_support.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/pickle_support.cpp
g++ -o boost/libs/python/src/object/stl_iterator.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object/stl_iterator.cpp
g++ -o boost/libs/python/src/object_operators.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object_operators.cpp
g++ -o boost/libs/python/src/object_protocol.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/object_protocol.cpp
g++ -o boost/libs/python/src/slice.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/slice.cpp
g++ -o boost/libs/python/src/str.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/str.cpp
g++ -o boost/libs/python/src/tuple.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/tuple.cpp
g++ -o boost/libs/python/src/wrapper.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DBOOST_PYTHON_SOURCE -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/python/src/wrapper.cpp
g++ -o boost/libs/system/src/error_code.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_SYSTEM_NO_DEPRECATED=1 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/system/src/error_code.cpp
g++ -o boost/libs/thread/src/future.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DBOOST_SYSTEM_NO_DEPRECATED=1 -DBOOST_THREAD_BUILD_DLL=1 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/thread/src/future.cpp
g++ -o boost/libs/thread/src/pthread/once.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DBOOST_SYSTEM_NO_DEPRECATED=1 -DBOOST_THREAD_BUILD_DLL=1 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/thread/src/pthread/once.cpp
g++ -o boost/libs/thread/src/pthread/thread.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DBOOST_SYSTEM_NO_DEPRECATED=1 -DBOOST_THREAD_BUILD_DLL=1 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/libs/thread/src/pthread/thread.cpp
g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/breadth_first_search_ext.cpp
g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/clustering_algorithm_ext.cpp
g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/connected_component_algorithm_ext.cpp
g++ -o boost_adaptbx/graph/graph_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/graph_ext.cpp
g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/graph_structure_comparison_ext.cpp
g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/maximum_clique_ext.cpp
g++ -o boost_adaptbx/graph/metric_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/metric_ext.cpp
g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/min_cut_max_flow_ext.cpp
g++ -o boost_adaptbx/graph/utility_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/graph/utility_ext.cpp
g++ -o boost_adaptbx/hybrid_times_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/hybrid_times_ext.cpp
g++ -o boost_adaptbx/meta_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/meta_ext.cpp
g++ -o boost_adaptbx/optional_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/optional_ext.cpp
g++ -o boost_adaptbx/rational_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/rational_ext.cpp
g++ -o boost_adaptbx/std_pair_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/std_pair_ext.cpp
g++ -o boost_adaptbx/tests/boost_thread_test.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/tests/boost_thread_test.cpp
g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/tests/python_streambuf_test_ext.cpp
g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/tests/tst_optional_copy.cpp
g++ -o lib/libboost_system.so -s -fopenmp -shared boost/libs/system/src/error_code.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib
g++ -o lib/libboost_thread.so -s -fopenmp -shared boost/libs/thread/src/future.o boost/libs/thread/src/pthread/thread.o boost/libs/thread/src/pthread/once.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_system -lrt
g++ -o boost_adaptbx/tests/tst_optional_copy -s -fopenmp -pthread boost_adaptbx/tests/tst_optional_copy.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o boost_adaptbx/tuple_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/tuple_ext.cpp
gcc -o ccp4io/libccp4/ccp4/ccp4_array.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/ccp4_array.c
gcc -o ccp4io/libccp4/ccp4/ccp4_parser.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/ccp4_parser.c
gcc -o ccp4io/libccp4/ccp4/ccp4_unitcell.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/ccp4_unitcell.c
gcc -o ccp4io/libccp4/ccp4/cmap_accessor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_accessor.c
gcc -o ccp4io/libccp4/ccp4/cmap_close.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_close.c
gcc -o ccp4io/libccp4/ccp4/cmap_data.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_data.c
gcc -o ccp4io/libccp4/ccp4/cmap_header.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_header.c
gcc -o ccp4io/libccp4/ccp4/cmap_labels.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_labels.c
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/tests/python_streambuf_test_ext.cpp:5:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/timer.hpp:21:98: note: #pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.
gcc -o ccp4io/libccp4/ccp4/cmap_open.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_open.c
gcc -o ccp4io/libccp4/ccp4/cmap_skew.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_skew.c
gcc -o ccp4io/libccp4/ccp4/cmap_stats.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_stats.c
gcc -o ccp4io/libccp4/ccp4/cmap_symop.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmap_symop.c
gcc -o ccp4io/libccp4/ccp4/cmtzlib.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cmtzlib.c
gcc -o ccp4io/libccp4/ccp4/cvecmat.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/cvecmat.c
gcc -o ccp4io/libccp4/ccp4/library_err.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/library_err.c
gcc -o ccp4io/libccp4/ccp4/library_file.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/library_file.c
gcc -o ccp4io/libccp4/ccp4/library_utils.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4/library_utils.c
g++ -o ccp4io/mmdb/hybrid_36.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/hybrid_36.cpp
g++ -o ccp4io/mmdb/mmdb_atom.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_atom.cpp
g++ -o ccp4io/mmdb/mmdb_bondmngr.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_bondmngr.cpp
g++ -o ccp4io/mmdb/mmdb_chain.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_chain.cpp
g++ -o ccp4io/mmdb/mmdb_cifdefs.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_cifdefs.cpp
g++ -o ccp4io/mmdb/mmdb_coormngr.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_coormngr.cpp
g++ -o ccp4io/mmdb/mmdb_cryst.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_cryst.cpp
g++ -o ccp4io/mmdb/mmdb_ficif.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_ficif.cpp
g++ -o ccp4io/mmdb/mmdb_io_file.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_io_file.cpp
g++ -o ccp4io/mmdb/mmdb_io_stream.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_io_stream.cpp
g++ -o ccp4io/mmdb/mmdb_machine_.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_machine_.cpp
g++ -o ccp4io/mmdb/mmdb_manager.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_manager.cpp
g++ -o ccp4io/mmdb/mmdb_mask.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_mask.cpp
g++ -o ccp4io/mmdb/mmdb_math_.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_math_.cpp
g++ -o ccp4io/mmdb/mmdb_math_align.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_math_align.cpp
g++ -o ccp4io/mmdb/mmdb_math_bfgsmin.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_math_bfgsmin.cpp
g++ -o ccp4io/mmdb/mmdb_math_fft.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_math_fft.cpp
g++ -o ccp4io/mmdb/mmdb_math_graph.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_math_graph.cpp
g++ -o ccp4io/mmdb/mmdb_math_linalg.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_math_linalg.cpp
g++ -o ccp4io/mmdb/mmdb_math_rand.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_math_rand.cpp
g++ -o ccp4io/mmdb/mmdb_mattype.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_mattype.cpp
g++ -o ccp4io/mmdb/mmdb_mmcif_.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_mmcif_.cpp
g++ -o ccp4io/mmdb/mmdb_model.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_model.cpp
g++ -o ccp4io/mmdb/mmdb_root.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_root.cpp
g++ -o ccp4io/mmdb/mmdb_rwbrook.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_rwbrook.cpp
g++ -o ccp4io/mmdb/mmdb_selmngr.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_selmngr.cpp
g++ -o ccp4io/mmdb/mmdb_seqsuperpose.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_seqsuperpose.cpp
g++ -o ccp4io/mmdb/mmdb_symop.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_symop.cpp
g++ -o ccp4io/mmdb/mmdb_tables.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_tables.cpp
g++ -o ccp4io/mmdb/mmdb_title.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_title.cpp
g++ -o ccp4io/mmdb/mmdb_uddata.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_uddata.cpp
g++ -o ccp4io/mmdb/mmdb_utils.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_utils.cpp
g++ -o ccp4io/mmdb/mmdb_xml_.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/mmdb/mmdb_xml_.cpp
g++ -o ccp4io/ssm/ssm_align.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/ssm/ssm_align.cpp
g++ -o ccp4io/ssm/ssm_csia.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/ssm/ssm_csia.cpp
g++ -o ccp4io/ssm/ssm_graph.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/ssm/ssm_graph.cpp
g++ -o ccp4io/ssm/ssm_malign.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/ssm/ssm_malign.cpp
g++ -o ccp4io/ssm/ssm_superpose.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/ssm/ssm_superpose.cpp
g++ -o ccp4io/ssm/ssm_vxedge.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/ssm/ssm_vxedge.cpp
gcc -o ccp4io_adaptbx/ccp4_diskio_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/ccp4_diskio_f.c
gcc -o ccp4io_adaptbx/ccp4_general.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/ccp4_general.c
gcc -o ccp4io_adaptbx/ccp4_general_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/ccp4_general_f.c
gcc -o ccp4io_adaptbx/ccp4_parser_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/ccp4_parser_f.c
gcc -o ccp4io_adaptbx/ccp4_program.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/ccp4_program.c
gcc -o ccp4io_adaptbx/ccp4_unitcell_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/ccp4_unitcell_f.c
gcc -o ccp4io_adaptbx/cmaplib_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/cmaplib_f.c
gcc -o ccp4io_adaptbx/cmtzlib_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/cmtzlib_f.c
gcc -o ccp4io_adaptbx/csymlib.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/csymlib.c
gcc -o ccp4io_adaptbx/csymlib_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/csymlib_f.c
g++ -o ccp4io_adaptbx/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io_adaptbx/ext.cpp
gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io_adaptbx/fortran_call_stubs.c
gcc -o ccp4io_adaptbx/library_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project ccp4io_adaptbx/library_f.c
gcc -o ccp4io_adaptbx/printf_wrappers.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io -I. -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io_adaptbx/printf_wrappers.c
g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/adp_restraints_bpl.cpp
g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/adp_restraints_ext.cpp
g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/adp_similarity_bpl.cpp
g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/aniso_restraints_bpl.cpp
g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp
g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/isotropic_adp_bpl.cpp
g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/rigid_bond_bpl.cpp
g++ -o cctbx/adp_restraints/rigu_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adp_restraints/rigu_bpl.cpp
g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adptbx/boost_python/adptbx_ext.cpp
g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adptbx/boost_python/anharmonic_ext.cpp
g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/adptbx/boost_python/hirshfeld.cpp
g++ -o cctbx/array_family/boost_python/flex_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/array_family/boost_python/flex_ext.cpp
g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp
g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/array_family/boost_python/flex_miller_index.cpp
g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/array_family/boost_python/flex_xray_scatterer.cpp
g++ -o cctbx/boost_python/emma_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/boost_python/emma_ext.cpp
g++ -o cctbx/boost_python/french_wilson_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/boost_python/french_wilson_ext.cpp
g++ -o cctbx/boost_python/orientation_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/boost_python/orientation_ext.cpp
g++ -o cctbx/boost_python/statistics_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/boost_python/statistics_ext.cpp
g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/covariance/boost_python/covariance_ext.cpp
g++ -o cctbx/crystal/asu_clusters_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/asu_clusters_bpl.cpp
g++ -o cctbx/crystal/close_packing_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/close_packing_bpl.cpp
g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/coordination_sequences_bpl.cpp
g++ -o cctbx/crystal/crystal_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/crystal_ext.cpp
g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/direct_space_asu_bpl.cpp
g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/incremental_pairs_bpl.cpp
g++ -o cctbx/crystal/neighbors_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/neighbors_bpl.cpp
g++ -o cctbx/crystal/pair_tables_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/pair_tables_bpl.cpp
g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/site_cluster_analysis_bpl.cpp
g++ -o cctbx/crystal/symmetry_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/crystal/symmetry_bpl.cpp
g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/dmtbx/boost_python/dmtbx_ext.cpp
g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/dmtbx/boost_python/triplet_generator.cpp
g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp
g++ -o cctbx/eltbx/attenuation_coefficient.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/attenuation_coefficient.cpp
g++ -o cctbx/eltbx/basic.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/basic.cpp
g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp
g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/chemical_elements_ext.cpp
g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/covalent_radii_ext.cpp
g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/fp_fdp_ext.cpp
g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/henke_ext.cpp
g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/icsd_radii_ext.cpp
g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/neutron_ext.cpp
g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/sasaki_ext.cpp
g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/tiny_pse_ext.cpp
g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/wavelengths_ext.cpp
g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/boost_python/xray_scattering_ext.cpp
g++ -o cctbx/eltbx/covalent_radii.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/covalent_radii.cpp
g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/electron_scattering/peng1996.cpp
g++ -o cctbx/eltbx/fp_fdp.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/fp_fdp.cpp
g++ -o cctbx/eltbx/henke.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke.cpp
g++ -o cctbx/eltbx/henke_tables_01_12.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_01_12.cpp
g++ -o cctbx/eltbx/henke_tables_13_24.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_13_24.cpp
g++ -o cctbx/eltbx/henke_tables_25_36.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_25_36.cpp
g++ -o cctbx/eltbx/henke_tables_37_48.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_37_48.cpp
g++ -o cctbx/eltbx/henke_tables_49_60.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_49_60.cpp
g++ -o cctbx/eltbx/henke_tables_61_72.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_61_72.cpp
g++ -o cctbx/eltbx/henke_tables_73_84.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_73_84.cpp
g++ -o cctbx/eltbx/henke_tables_85_92.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/henke_tables_85_92.cpp
g++ -o cctbx/eltbx/icsd_radii.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/icsd_radii.cpp
g++ -o cctbx/eltbx/neutron.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/neutron.cpp
g++ -o cctbx/eltbx/sasaki.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki.cpp
g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki_tables_01_12.cpp
g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki_tables_13_24.cpp
g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki_tables_25_36.cpp
g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki_tables_37_48.cpp
g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki_tables_49_60.cpp
g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki_tables_61_72.cpp
g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project cctbx/eltbx/sasaki_tables_73_82.cpp
g++ -o cctbx/eltbx/tiny_pse.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/tiny_pse.cpp
g++ -o cctbx/eltbx/wavelengths.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/wavelengths.cpp
g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/xray_scattering/it1992.cpp
g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/xray_scattering/n_gaussian.cpp
g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp
g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/eltbx/xray_scattering/wk1995.cpp
g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Icctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples/convert_ccp4_symop_lib.cpp
g++ -o cctbx/examples/find_distances.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Icctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples/find_distances.cpp
g++ -o cctbx/examples/getting_started.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Icctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples/getting_started.cpp
g++ -o cctbx/examples/lattice_symmetry.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Icctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples/lattice_symmetry.cpp
g++ -o cctbx/examples/merging/large_scale_merging_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/eigen -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples/merging/large_scale_merging_ext.cpp
g++ -o cctbx/examples/sym_equiv_sites.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Icctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples/sym_equiv_sites.cpp
g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Icctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx/examples -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/examples/sys_abs_equiv_space_groups.cpp
g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry/boost_python/geometry_ext.cpp
g++ -o cctbx/geometry_restraints/angle_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/angle_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/bond_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/bond_similarity_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/bond_sorted_bpl.cpp
g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/chirality_bpl.cpp
g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/dihedral_bpl.cpp
g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/geometry_restraints_ext.cpp
g++ -o cctbx/geometry_restraints/motif_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/motif_bpl.cpp
g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/nonbonded_bpl.cpp
g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp
g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/parallelity_bpl.cpp
g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/geometry_restraints/planarity_bpl.cpp
g++ -o cctbx/maptbx/asymmetric_map.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/asymmetric_map.cpp
g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/asymmetric_map_ext.cpp
g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/coordinate_transformers.cpp
g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp
g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/grid_tags.cpp
g++ -o cctbx/maptbx/boost_python/gridding.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/gridding.cpp
g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/maptbx_ext.cpp
g++ -o cctbx/maptbx/boost_python/misc.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/misc.cpp
g++ -o cctbx/maptbx/boost_python/peak_search.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/peak_search.cpp
g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/pymol_interface.cpp
g++ -o cctbx/maptbx/boost_python/statistics.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/statistics.cpp
g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/maptbx/boost_python/structure_factors.cpp
g++ -o cctbx/masks/boost_python/masks_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/masks/boost_python/masks_ext.cpp
g++ -o cctbx/math/boost_python/math_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/math/boost_python/math_ext.cpp
g++ -o cctbx/math/time_trigonometry.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/math/time_trigonometry.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/math/time_trigonometry.cpp:3:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/timer.hpp:21:98: note: #pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.
g++ -o cctbx/miller/asu.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/asu.cpp
g++ -o cctbx/miller/bins.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/bins.cpp
g++ -o cctbx/miller/index_generator.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/index_generator.cpp
g++ -o cctbx/miller/index_span.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/index_span.cpp
g++ -o cctbx/miller/match_bijvoet_mates.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/match_bijvoet_mates.cpp
g++ -o cctbx/miller/match_indices.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/match_indices.cpp
g++ -o cctbx/miller/match_multi_indices.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/match_multi_indices.cpp
g++ -o cctbx/miller/sym_equiv.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/sym_equiv.cpp
g++ -o cctbx/sgtbx/bricks.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/bricks.cpp
g++ -o cctbx/sgtbx/change_of_basis_op.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/change_of_basis_op.cpp
g++ -o cctbx/sgtbx/find_affine.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/find_affine.cpp
g++ -o cctbx/sgtbx/group_codes.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/group_codes.cpp
g++ -o cctbx/sgtbx/hall_in.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/hall_in.cpp
g++ -o cctbx/sgtbx/lattice_tr.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/lattice_tr.cpp
g++ -o cctbx/sgtbx/lattice_symmetry.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/lattice_symmetry.cpp
g++ -o cctbx/sgtbx/miller.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/miller.cpp
g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/reciprocal_space_asu.cpp
g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/reciprocal_space_ref_asu.cpp
g++ -o cctbx/sgtbx/rot_mx.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/rot_mx.cpp
g++ -o cctbx/sgtbx/rot_mx_info.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/rot_mx_info.cpp
g++ -o cctbx/sgtbx/row_echelon_solve.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/row_echelon_solve.cpp
g++ -o cctbx/sgtbx/rt_mx.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/rt_mx.cpp
g++ -o cctbx/sgtbx/select_generators.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/select_generators.cpp
g++ -o cctbx/sgtbx/seminvariant.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/seminvariant.cpp
g++ -o cctbx/sgtbx/site_symmetry.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/site_symmetry.cpp
g++ -o cctbx/sgtbx/space_group.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/space_group.cpp
g++ -o cctbx/sgtbx/space_group_type.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/space_group_type.cpp
g++ -o cctbx/sgtbx/symbols.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/symbols.cpp
g++ -o cctbx/sgtbx/tensor_rank_2.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/tensor_rank_2.cpp
g++ -o cctbx/sgtbx/tr_group.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/tr_group.cpp
g++ -o cctbx/sgtbx/tr_vec.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/tr_vec.cpp
g++ -o cctbx/sgtbx/utils.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/utils.cpp
g++ -o cctbx/sgtbx/wyckoff.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/wyckoff.cpp
g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp
g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp
g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/reference_settings/normalizer.cpp
g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/reference_settings/wyckoff.cpp
g++ -o cctbx/uctbx/uctbx.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/uctbx/uctbx.cpp
g++ -o cctbx/uctbx/spoil_optimization.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/uctbx/spoil_optimization.cpp
g++ -o cctbx/uctbx/crystal_orientation.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/uctbx/crystal_orientation.cpp
g++ -o cctbx/merging/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/merging/ext.cpp
g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/amplitude_normalisation.cpp
g++ -o cctbx/miller/boost_python/asu.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/asu.cpp
g++ -o cctbx/miller/boost_python/bins.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/bins.cpp
g++ -o cctbx/miller/boost_python/change_basis.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/change_basis.cpp
g++ -o lib/libcctbx.so -shared -s -fopenmp cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o cctbx/math/time_trigonometry -s -fopenmp -pthread cctbx/math/time_trigonometry.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lm
g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/expand_to_p1.cpp
g++ -o cctbx/miller/boost_python/f_calc_map.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/f_calc_map.cpp
g++ -o cctbx/miller/boost_python/index_generator.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/index_generator.cpp
g++ -o cctbx/miller/boost_python/index_span.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/index_span.cpp
g++ -o cctbx/miller/boost_python/lookup_utils.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/lookup_utils.cpp
g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/match_bijvoet_mates.cpp
g++ -o cctbx/miller/boost_python/match_indices.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/match_indices.cpp
g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/match_multi_indices.cpp
g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/merge_equivalents.cpp
g++ -o cctbx/miller/boost_python/miller_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/miller_ext.cpp
g++ -o cctbx/miller/boost_python/phase_integrator.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/phase_integrator.cpp
g++ -o cctbx/miller/boost_python/phase_transfer.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/phase_transfer.cpp
g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp
g++ -o cctbx/miller/boost_python/slices.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/slices.cpp
g++ -o cctbx/miller/boost_python/sym_equiv.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/miller/boost_python/sym_equiv.cpp
g++ -o cctbx/multipolar/aspherical_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/multipolar/aspherical_ext.cpp
g++ -o cctbx/sgtbx/boost_python/brick.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/brick.cpp
g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/change_of_basis.cpp
g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/find_affine.cpp
g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/lattice_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/phase_info.cpp
g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp
g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/rot_mx.cpp
g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/rt_mx.cpp
g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/search_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/select_generators.cpp
g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/seminvariant.cpp
g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/sgtbx_ext.cpp
g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/site_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/space_group.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/space_group.cpp
g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/space_group_type.cpp
g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp
g++ -o cctbx/sgtbx/boost_python/symbols.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/symbols.cpp
g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/tensor_rank_2.cpp
g++ -o cctbx/sgtbx/boost_python/tensors.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/tensors.cpp
g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/tr_vec.cpp
g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/boost_python/wyckoff.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/direct_space_asu/proto/cut.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp
g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp
g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/translation_search/boost_python/fast_nv1995.cpp
g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/translation_search/boost_python/fast_terms.cpp
g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/translation_search/boost_python/symmetry_flags.cpp
g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/translation_search/boost_python/translation_search_ext.cpp
g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp
g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/uctbx/boost_python/uctbx_ext.cpp
g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DHAVE_SINGLEFILE_NCDIST -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/uctbx/determine_unit_cell/ext.cpp
g++ -o cctbx/xray/boost_python/conversions.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/conversions.cpp
g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/curvatures_simple.cpp
g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp
g++ -o cctbx/xray/boost_python/extinction.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/extinction.cpp
g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/f_model_bpl.cpp
g++ -o cctbx/xray/boost_python/fast_gradients.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/fast_gradients.cpp
g++ -o cctbx/xray/boost_python/gradient_flags.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/gradient_flags.cpp
g++ -o cctbx/xray/boost_python/gradients_direct.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/gradients_direct.cpp
g++ -o cctbx/xray/boost_python/grouped_data.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/grouped_data.cpp
g++ -o cctbx/xray/boost_python/minimization.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/minimization.cpp
g++ -o cctbx/xray/boost_python/parameter_map.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/parameter_map.cpp
g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/sampled_model_density.cpp
g++ -o cctbx/xray/boost_python/sampling_base.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/sampling_base.cpp
g++ -o cctbx/xray/boost_python/scatterer.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/scatterer.cpp
g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/scatterer_flags.cpp
g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/scattering_type_registry.cpp
g++ -o cctbx/xray/boost_python/sigmaa.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/sigmaa.cpp
g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/structure_factors_direct.cpp
g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/structure_factors_simple.cpp
g++ -o cctbx/xray/boost_python/targets.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/targets.cpp
g++ -o cctbx/xray/boost_python/twin_components.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/twin_components.cpp
g++ -o cctbx/xray/boost_python/twin_targets.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/twin_targets.cpp
g++ -o cctbx/xray/boost_python/xray_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/boost_python/xray_ext.cpp
g++ -o cctbx/xray/observations/boost_python/observations.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/observations/boost_python/observations.cpp
g++ -o lib/libcctbx_sgtbx_asu.so -s -fopenmp -pthread -shared cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lm
g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -s -fopenmp -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/observations/boost_python/observations_ext.cpp
g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp
g++ -o chiltbx/handle_test.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/chiltbx/handle_test.cpp
g++ -o phaser/codebase/phaser/main/main.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/main/main.cc
g++ -o chiltbx/handle_test -s -fopenmp chiltbx/handle_test.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib
g++ -o phaser/codebase/phaser/run/runANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runANO.cc
g++ -o phaser/codebase/phaser/run/runCCA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runCCA.cc
g++ -o phaser/codebase/phaser/run/runNMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runNMA.cc
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr_ref.hpp:5:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr.hpp:4,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/data_of_type.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/targets/shelxl_wght_ls.hpp:1,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp:23:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:46:21: warning: ‘fem::byte0’ defined but not used [-Wunused-variable]
   static const char byte0 = zero<char>();
                     ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:48:21: warning: ‘fem::bool0’ defined but not used [-Wunused-variable]
   static const bool bool0 = zero<bool>();
                     ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:50:22: warning: ‘fem::float0’ defined but not used [-Wunused-variable]
   static const float float0 = zero<float>();
                      ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:52:28: warning: ‘fem::long_double0’ defined but not used [-Wunused-variable]
   static const long double long_double0 = zero<long double>();
                            ^
g++ -o phaser/codebase/phaser/run/runSCEDS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runSCEDS.cc
g++ -o phaser/codebase/phaser/run/runNMAXYZ.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runNMAXYZ.cc
g++ -o phaser/codebase/phaser/run/runNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runNCS.cc
g++ -o phaser/codebase/phaser/run/runDFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runDFAC.cc
g++ -o phaser/codebase/phaser/run/runMR_ELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_ELLG.cc
g++ -o phaser/codebase/phaser/run/runMR_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_DAT.cc
g++ -o phaser/codebase/phaser/run/runMR_PREP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_PREP.cc
g++ -o phaser/codebase/phaser/run/runMR_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_AUTO.cc
g++ -o phaser/codebase/phaser/run/runMR_ATOM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_ATOM.cc
g++ -o phaser/codebase/phaser/run/runMR_FULL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FULL.cc
g++ -o phaser/codebase/phaser/run/runMR_FAST.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FAST.cc
g++ -o phaser/codebase/phaser/run/runMR_PAK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_PAK.cc
g++ -o phaser/codebase/phaser/run/runMR_RNP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_RNP.cc
g++ -o phaser/codebase/phaser/run/runMR_OCC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_OCC.cc
g++ -o phaser/codebase/phaser/run/runMR_FRF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FRF.cc
g++ -o phaser/codebase/phaser/run/runMR_FTF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FTF.cc
g++ -o phaser/codebase/phaser/run/runMR_GYRE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_GYRE.cc
g++ -o phaser/codebase/phaser/run/runMR_GMBL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_GMBL.cc
g++ -o phaser/codebase/phaser/run/runMR_FUSE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FUSE.cc
g++ -o phaser/codebase/phaser/run/runEP_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_DAT.cc
g++ -o phaser/codebase/phaser/run/runEP_SAD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_SAD.cc
g++ -o phaser/codebase/phaser/run/runEP_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_AUTO.cc
g++ -o phaser/codebase/phaser/run/runEP_SSD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_SSD.cc
g++ -o phaser/codebase/phaser/run/runSANDBOX.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runSANDBOX.cc
g++ -o phaser/codebase/phaser/io/END.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/END.cc
g++ -o phaser/codebase/phaser/io/Errors.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/Errors.cc
g++ -o phaser/codebase/phaser/io/CCP4base.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/CCP4base.cc
g++ -o phaser/codebase/phaser/io/Preprocessor.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/Preprocessor.cc
g++ -o phaser/codebase/phaser/io/Output.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/Output.cc
g++ -o phaser/codebase/phaser/io/Memory.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/Memory.cc
g++ -o phaser/codebase/phaser/io/phenix_out.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/phenix_out.cc
g++ -o phaser/codebase/phaser/io/InputMR_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_AUTO.cc
g++ -o phaser/codebase/phaser/io/InputMR_ATOM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_ATOM.cc
g++ -o phaser/codebase/phaser/io/InputMR_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_DAT.cc
g++ -o phaser/codebase/phaser/io/InputANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputANO.cc
g++ -o phaser/codebase/phaser/io/InputMR_ELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_ELLG.cc
g++ -o phaser/codebase/phaser/io/InputMR_FRF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_FRF.cc
g++ -o phaser/codebase/phaser/io/InputMR_FTF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_FTF.cc
g++ -o phaser/codebase/phaser/io/InputMR_PAK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_PAK.cc
g++ -o phaser/codebase/phaser/io/InputMR_RNP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_RNP.cc
g++ -o phaser/codebase/phaser/io/InputMR_OCC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_OCC.cc
g++ -o phaser/codebase/phaser/io/InputNMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputNMA.cc
ar rc lib/libphaserrun.a phaser/codebase/phaser/run/runANO.o phaser/codebase/phaser/run/runCCA.o phaser/codebase/phaser/run/runNMA.o phaser/codebase/phaser/run/runSCEDS.o phaser/codebase/phaser/run/runNMAXYZ.o phaser/codebase/phaser/run/runNCS.o phaser/codebase/phaser/run/runDFAC.o phaser/codebase/phaser/run/runMR_ELLG.o phaser/codebase/phaser/run/runMR_DAT.o phaser/codebase/phaser/run/runMR_PREP.o phaser/codebase/phaser/run/runMR_AUTO.o phaser/codebase/phaser/run/runMR_ATOM.o phaser/codebase/phaser/run/runMR_FULL.o phaser/codebase/phaser/run/runMR_FAST.o phaser/codebase/phaser/run/runMR_PAK.o phaser/codebase/phaser/run/runMR_RNP.o phaser/codebase/phaser/run/runMR_OCC.o phaser/codebase/phaser/run/runMR_FRF.o phaser/codebase/phaser/run/runMR_FTF.o phaser/codebase/phaser/run/runMR_GYRE.o phaser/codebase/phaser/run/runMR_GMBL.o phaser/codebase/phaser/run/runMR_FUSE.o phaser/codebase/phaser/run/runEP_DAT.o phaser/codebase/phaser/run/runEP_SAD.o phaser/codebase/phaser/run/runEP_AUTO.o phaser/codebase/phaser/run/runEP_SSD.o phaser/codebase/phaser/run/runSANDBOX.o
ranlib lib/libphaserrun.a
g++ -o phaser/codebase/phaser/io/InputCCA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputCCA.cc
g++ -o phaser/codebase/phaser/io/InputNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputNCS.cc
g++ -o phaser/codebase/phaser/io/InputDFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputDFAC.cc
g++ -o phaser/codebase/phaser/io/ResultMR_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR_DAT.cc
g++ -o phaser/codebase/phaser/io/ResultANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultANO.cc
g++ -o phaser/codebase/phaser/io/ResultMR_RF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR_RF.cc
g++ -o phaser/codebase/phaser/io/ResultMR_TF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR_TF.cc
g++ -o phaser/codebase/phaser/io/ResultMR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR.cc
g++ -o phaser/codebase/phaser/io/ResultGYRE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultGYRE.cc
g++ -o phaser/codebase/phaser/io/ResultCCA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultCCA.cc
g++ -o phaser/codebase/phaser/io/ResultNMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultNMA.cc
g++ -o phaser/codebase/phaser/io/ResultNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultNCS.cc
g++ -o phaser/codebase/phaser/io/ResultDFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultDFAC.cc
g++ -o phaser/codebase/phaser/io/ResultELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultELLG.cc
g++ -o phaser/codebase/phaser/io/PdbHandler.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/PdbHandler.cc
g++ -o phaser/codebase/phaser/io/MtzHandler.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/MtzHandler.cc
g++ -o phaser/codebase/phaser/io/InputEP_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_DAT.cc
g++ -o phaser/codebase/phaser/io/InputEP_SAD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_SAD.cc
g++ -o phaser/codebase/phaser/io/InputEP_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_AUTO.cc
g++ -o phaser/codebase/phaser/io/ResultEP_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultEP_DAT.cc
g++ -o phaser/codebase/phaser/io/ResultEP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultEP.cc
g++ -o phaser/codebase/phaser/io/ResultFile.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultFile.cc
gcc -o phaser/codebase/phaser/io/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/hybrid_36_c.c
g++ -o phaser/codebase/phaser/io/InputMR_FUSE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_FUSE.cc
g++ -o phaser/codebase/phaser/io/InputEP_SSD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_SSD.cc
g++ -o phaser/codebase/phaser/io/ResultSSD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultSSD.cc
g++ -o phaser/codebase/phaser/io/ResultCore.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultCore.cc
g++ -o phaser/codebase/phaser/keywords/ATOM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ATOM.cc
g++ -o phaser/codebase/phaser/keywords/BINS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/BINS.cc
g++ -o phaser/codebase/phaser/keywords/BFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/BFAC.cc
g++ -o phaser/codebase/phaser/keywords/BOXS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/BOXS.cc
g++ -o phaser/codebase/phaser/keywords/CELL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/CELL.cc
g++ -o phaser/codebase/phaser/keywords/CLUS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/CLUS.cc
g++ -o phaser/codebase/phaser/keywords/COMP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/COMP.cc
g++ -o phaser/codebase/phaser/keywords/CRYS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/CRYS.cc
g++ -o phaser/codebase/phaser/keywords/DDM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/DDM.cc
g++ -o phaser/codebase/phaser/keywords/EIGE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/EIGE.cc
g++ -o phaser/codebase/phaser/keywords/ELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ELLG.cc
g++ -o phaser/codebase/phaser/keywords/ENSE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ENSE.cc
ar rc lib/libphaserio.a phaser/codebase/phaser/io/END.o phaser/codebase/phaser/io/Errors.o phaser/codebase/phaser/io/CCP4base.o phaser/codebase/phaser/io/Preprocessor.o phaser/codebase/phaser/io/Output.o phaser/codebase/phaser/io/Memory.o phaser/codebase/phaser/io/phenix_out.o phaser/codebase/phaser/io/InputMR_AUTO.o phaser/codebase/phaser/io/InputMR_ATOM.o phaser/codebase/phaser/io/InputMR_DAT.o phaser/codebase/phaser/io/InputANO.o phaser/codebase/phaser/io/InputMR_ELLG.o phaser/codebase/phaser/io/InputMR_FRF.o phaser/codebase/phaser/io/InputMR_FTF.o phaser/codebase/phaser/io/InputMR_PAK.o phaser/codebase/phaser/io/InputMR_RNP.o phaser/codebase/phaser/io/InputMR_OCC.o phaser/codebase/phaser/io/InputNMA.o phaser/codebase/phaser/io/InputCCA.o phaser/codebase/phaser/io/InputNCS.o phaser/codebase/phaser/io/InputDFAC.o phaser/codebase/phaser/io/ResultMR_DAT.o phaser/codebase/phaser/io/ResultANO.o phaser/codebase/phaser/io/ResultMR_RF.o phaser/codebase/phaser/io/ResultMR_TF.o phaser/codebase/phaser/io/ResultMR.o phaser/codebase/phaser/io/ResultGYRE.o phaser/codebase/phaser/io/ResultCCA.o phaser/codebase/phaser/io/ResultNMA.o phaser/codebase/phaser/io/ResultNCS.o phaser/codebase/phaser/io/ResultDFAC.o phaser/codebase/phaser/io/ResultELLG.o phaser/codebase/phaser/io/PdbHandler.o phaser/codebase/phaser/io/MtzHandler.o phaser/codebase/phaser/io/InputEP_DAT.o phaser/codebase/phaser/io/InputEP_SAD.o phaser/codebase/phaser/io/InputEP_AUTO.o phaser/codebase/phaser/io/ResultEP_DAT.o phaser/codebase/phaser/io/ResultEP.o phaser/codebase/phaser/io/ResultFile.o phaser/codebase/phaser/io/hybrid_36_c.o phaser/codebase/phaser/io/InputMR_FUSE.o phaser/codebase/phaser/io/InputEP_SSD.o phaser/codebase/phaser/io/ResultSSD.o phaser/codebase/phaser/io/ResultCore.o
ranlib lib/libphaserio.a
g++ -o phaser/codebase/phaser/keywords/ENM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ENM.cc
g++ -o phaser/codebase/phaser/keywords/FFTS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/FFTS.cc
g++ -o phaser/codebase/phaser/keywords/FIND.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/FIND.cc
g++ -o phaser/codebase/phaser/keywords/FORM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/FORM.cc
g++ -o phaser/codebase/phaser/keywords/HAND.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/HAND.cc
g++ -o phaser/codebase/phaser/keywords/HKLI.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/HKLI.cc
g++ -o phaser/codebase/phaser/keywords/HKLO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/HKLO.cc
g++ -o phaser/codebase/phaser/keywords/INFO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/INFO.cc
g++ -o phaser/codebase/phaser/keywords/JOBS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/JOBS.cc
g++ -o phaser/codebase/phaser/keywords/KEYW.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/KEYW.cc
g++ -o phaser/codebase/phaser/keywords/KILL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/KILL.cc
g++ -o phaser/codebase/phaser/keywords/LABI.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/LABI.cc
g++ -o phaser/codebase/phaser/keywords/LLGC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/LLGC.cc
g++ -o phaser/codebase/phaser/keywords/LLGM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/LLGM.cc
g++ -o phaser/codebase/phaser/keywords/MACA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACA.cc
g++ -o phaser/codebase/phaser/keywords/MACJ.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACJ.cc
g++ -o phaser/codebase/phaser/keywords/MACM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACM.cc
g++ -o phaser/codebase/phaser/keywords/MACO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACO.cc
g++ -o phaser/codebase/phaser/keywords/MACG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACG.cc
g++ -o phaser/codebase/phaser/keywords/MACS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACS.cc
g++ -o phaser/codebase/phaser/keywords/MACT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACT.cc
g++ -o phaser/codebase/phaser/keywords/MUTE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MUTE.cc
g++ -o phaser/codebase/phaser/keywords/NMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/NMA.cc
g++ -o phaser/codebase/phaser/keywords/NORM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/NORM.cc
g++ -o phaser/codebase/phaser/keywords/OCCU.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/OCCU.cc
g++ -o phaser/codebase/phaser/keywords/OUTL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/OUTL.cc
g++ -o phaser/codebase/phaser/keywords/PACK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PACK.cc
g++ -o phaser/codebase/phaser/keywords/PART.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PART.cc
g++ -o phaser/codebase/phaser/keywords/PEAK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PEAK.cc
g++ -o phaser/codebase/phaser/keywords/PERM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PERM.cc
g++ -o phaser/codebase/phaser/keywords/PERT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PERT.cc
g++ -o phaser/codebase/phaser/keywords/PURG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PURG.cc
g++ -o phaser/codebase/phaser/keywords/RESC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/RESC.cc
g++ -o phaser/codebase/phaser/keywords/RESH.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/RESH.cc
g++ -o phaser/codebase/phaser/keywords/RESO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/RESO.cc
g++ -o phaser/codebase/phaser/keywords/RFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/RFAC.cc
g++ -o phaser/codebase/phaser/keywords/ROOT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ROOT.cc
g++ -o phaser/codebase/phaser/keywords/ROTA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ROTA.cc
g++ -o phaser/codebase/phaser/keywords/SAMP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SAMP.cc
g++ -o phaser/codebase/phaser/keywords/SCAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SCAT.cc
g++ -o phaser/codebase/phaser/keywords/SCED.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SCED.cc
g++ -o phaser/codebase/phaser/keywords/SEAR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SEAR.cc
g++ -o phaser/codebase/phaser/keywords/SGAL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SGAL.cc
g++ -o phaser/codebase/phaser/keywords/SOLP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SOLP.cc
g++ -o phaser/codebase/phaser/keywords/SOLU.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SOLU.cc
g++ -o phaser/codebase/phaser/keywords/SORT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SORT.cc
g++ -o phaser/codebase/phaser/keywords/SPAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SPAC.cc
g++ -o phaser/codebase/phaser/keywords/TARG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TARG.cc
g++ -o phaser/codebase/phaser/keywords/TITL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TITL.cc
g++ -o phaser/codebase/phaser/keywords/TNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TNCS.cc
g++ -o phaser/codebase/phaser/keywords/TOPF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TOPF.cc
g++ -o phaser/codebase/phaser/keywords/TRAN.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TRAN.cc
g++ -o phaser/codebase/phaser/keywords/WAVE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/WAVE.cc
g++ -o phaser/codebase/phaser/keywords/VARS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/VARS.cc
g++ -o phaser/codebase/phaser/keywords/VERB.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/VERB.cc
g++ -o phaser/codebase/phaser/keywords/XYZO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/XYZO.cc
g++ -o phaser/codebase/phaser/keywords/ZSCO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ZSCO.cc
g++ -o phaser/codebase/phaser/src/Brick.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Brick.cc
g++ -o phaser/codebase/phaser/src/Cluster.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Cluster.cc
g++ -o phaser/codebase/phaser/src/Minimizer.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Minimizer.cc
g++ -o phaser/codebase/phaser/src/Clmn.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Clmn.cc
g++ -o phaser/codebase/phaser/src/DataA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataA.cc
g++ -o phaser/codebase/phaser/src/DataB.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataB.cc
g++ -o phaser/codebase/phaser/src/DataMR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataMR.cc
ar rc lib/libphaserkey.a phaser/codebase/phaser/keywords/ATOM.o phaser/codebase/phaser/keywords/BINS.o phaser/codebase/phaser/keywords/BFAC.o phaser/codebase/phaser/keywords/BOXS.o phaser/codebase/phaser/keywords/CELL.o phaser/codebase/phaser/keywords/CLUS.o phaser/codebase/phaser/keywords/COMP.o phaser/codebase/phaser/keywords/CRYS.o phaser/codebase/phaser/keywords/DDM.o phaser/codebase/phaser/keywords/EIGE.o phaser/codebase/phaser/keywords/ELLG.o phaser/codebase/phaser/keywords/ENSE.o phaser/codebase/phaser/keywords/ENM.o phaser/codebase/phaser/keywords/FFTS.o phaser/codebase/phaser/keywords/FIND.o phaser/codebase/phaser/keywords/FORM.o phaser/codebase/phaser/keywords/HAND.o phaser/codebase/phaser/keywords/HKLI.o phaser/codebase/phaser/keywords/HKLO.o phaser/codebase/phaser/keywords/INFO.o phaser/codebase/phaser/keywords/JOBS.o phaser/codebase/phaser/keywords/KEYW.o phaser/codebase/phaser/keywords/KILL.o phaser/codebase/phaser/keywords/LABI.o phaser/codebase/phaser/keywords/LLGC.o phaser/codebase/phaser/keywords/LLGM.o phaser/codebase/phaser/keywords/MACA.o phaser/codebase/phaser/keywords/MACJ.o phaser/codebase/phaser/keywords/MACM.o phaser/codebase/phaser/keywords/MACO.o phaser/codebase/phaser/keywords/MACG.o phaser/codebase/phaser/keywords/MACS.o phaser/codebase/phaser/keywords/MACT.o phaser/codebase/phaser/keywords/MUTE.o phaser/codebase/phaser/keywords/NMA.o phaser/codebase/phaser/keywords/NORM.o phaser/codebase/phaser/keywords/OCCU.o phaser/codebase/phaser/keywords/OUTL.o phaser/codebase/phaser/keywords/PACK.o phaser/codebase/phaser/keywords/PART.o phaser/codebase/phaser/keywords/PEAK.o phaser/codebase/phaser/keywords/PERM.o phaser/codebase/phaser/keywords/PERT.o phaser/codebase/phaser/keywords/PURG.o phaser/codebase/phaser/keywords/RESC.o phaser/codebase/phaser/keywords/RESH.o phaser/codebase/phaser/keywords/RESO.o phaser/codebase/phaser/keywords/RFAC.o phaser/codebase/phaser/keywords/ROOT.o phaser/codebase/phaser/keywords/ROTA.o phaser/codebase/phaser/keywords/SAMP.o phaser/codebase/phaser/keywords/SCAT.o phaser/codebase/phaser/keywords/SCED.o phaser/codebase/phaser/keywords/SEAR.o phaser/codebase/phaser/keywords/SGAL.o phaser/codebase/phaser/keywords/SOLP.o phaser/codebase/phaser/keywords/SOLU.o phaser/codebase/phaser/keywords/SORT.o phaser/codebase/phaser/keywords/SPAC.o phaser/codebase/phaser/keywords/TARG.o phaser/codebase/phaser/keywords/TITL.o phaser/codebase/phaser/keywords/TNCS.o phaser/codebase/phaser/keywords/TOPF.o phaser/codebase/phaser/keywords/TRAN.o phaser/codebase/phaser/keywords/WAVE.o phaser/codebase/phaser/keywords/VARS.o phaser/codebase/phaser/keywords/VERB.o phaser/codebase/phaser/keywords/XYZO.o phaser/codebase/phaser/keywords/ZSCO.o
ranlib lib/libphaserkey.a
g++ -o phaser/codebase/phaser/src/Ensemble.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Ensemble.cc
g++ -o phaser/codebase/phaser/src/EnsembleMAP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/EnsembleMAP.cc
g++ -o phaser/codebase/phaser/src/EnsemblePDB.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/EnsemblePDB.cc
g++ -o phaser/codebase/phaser/src/Epsilon.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Epsilon.cc
g++ -o phaser/codebase/phaser/src/FastRot.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/FastRot.cc
g++ -o phaser/codebase/phaser/src/Gfunction.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Gfunction.cc
g++ -o phaser/codebase/phaser/src/Hexagonal.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Hexagonal.cc
g++ -o phaser/codebase/phaser/src/Molecule.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Molecule.cc
g++ -o phaser/codebase/phaser/src/TraceMol.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/TraceMol.cc
g++ -o phaser/codebase/phaser/src/RefineANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineANO.cc
g++ -o phaser/codebase/phaser/src/RefineBase.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineBase.cc
g++ -o phaser/codebase/phaser/src/RefineBase2.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineBase2.cc
g++ -o phaser/codebase/phaser/src/RefineMR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineMR.cc
g++ -o phaser/codebase/phaser/src/RefineGYRE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineGYRE.cc
g++ -o phaser/codebase/phaser/src/RefineOCC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineOCC.cc
g++ -o phaser/codebase/phaser/src/SiteListAng.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SiteListAng.cc
g++ -o phaser/codebase/phaser/src/SiteList.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SiteList.cc
g++ -o phaser/codebase/phaser/src/SiteListXyz.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SiteListXyz.cc
g++ -o phaser/codebase/phaser/src/Sites.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Sites.cc
g++ -o phaser/codebase/phaser/src/LlgcMapSites.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/LlgcMapSites.cc
g++ -o phaser/codebase/phaser/src/SpaceGroup.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SpaceGroup.cc
g++ -o phaser/codebase/phaser/src/UnitCell.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/UnitCell.cc
g++ -o phaser/codebase/phaser/src/BinStats.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/BinStats.cc
g++ -o phaser/codebase/phaser/src/EqualUnity.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/EqualUnity.cc
g++ -o phaser/codebase/phaser/src/Integration.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Integration.cc
g++ -o phaser/codebase/phaser/src/RefineSADb.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADb.cc
g++ -o phaser/codebase/phaser/src/RefineSADc.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADc.cc
g++ -o phaser/codebase/phaser/src/RefineSADt.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADt.cc
g++ -o phaser/codebase/phaser/src/RefineSADg.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADg.cc
g++ -o phaser/codebase/phaser/src/RefineSADh.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADh.cc
g++ -o phaser/codebase/phaser/src/RefineSADi.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADi.cc
g++ -o phaser/codebase/phaser/src/RefineSADf.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADf.cc
g++ -o phaser/codebase/phaser/src/RefineSADp.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADp.cc
g++ -o phaser/codebase/phaser/src/RefineSADl.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADl.cc
g++ -o phaser/codebase/phaser/src/RefineSADm.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADm.cc
g++ -o phaser/codebase/phaser/src/RefineNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineNCS.cc
g++ -o phaser/codebase/phaser/src/SAD2a.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD2a.cc
g++ -o phaser/codebase/phaser/src/SAD2c.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD2c.cc
g++ -o phaser/codebase/phaser/src/SAD2s.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD2s.cc
g++ -o phaser/codebase/phaser/src/SAD1.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD1.cc
g++ -o phaser/codebase/phaser/src/MapEnsemble.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/MapEnsemble.cc
g++ -o phaser/codebase/phaser/src/MapTraceMol.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/MapTraceMol.cc
g++ -o phaser/codebase/phaser/src/Solvent.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Solvent.cc
g++ -o phaser/codebase/phaser/src/HandEP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/HandEP.cc
g++ -o phaser/codebase/phaser/src/ListEditing.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/ListEditing.cc
g++ -o phaser/codebase/phaser/src/Dfactor.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Dfactor.cc
g++ -o phaser/codebase/phaser/src/Bin.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Bin.cc
g++ -o phaser/codebase/phaser/src/Cubic.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Cubic.cc
g++ -o phaser/codebase/phaser/src/Composition.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Composition.cc
g++ -o phaser/codebase/phaser/src/TncsVar.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/TncsVar.cc
g++ -o phaser/codebase/phaser/src/RefineSADs.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADs.cc
g++ -o phaser/codebase/phaser/src/DataSAD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataSAD.cc
g++ -o phaser/codebase/phaser/src/Patterson.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Patterson.cc
g++ -o phaser/codebase/phaser/mr_objects/mr_solution.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/mr_solution.cc
g++ -o phaser/codebase/phaser/mr_objects/mr_set.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/mr_set.cc
g++ -o phaser/codebase/phaser/mr_objects/mr_clash.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/mr_clash.cc
g++ -o phaser/codebase/phaser/mr_objects/mr_ndim.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/mr_ndim.cc
g++ -o phaser/codebase/phaser/mr_objects/data_pdb.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/data_pdb.cc
g++ -o phaser/codebase/phaser/mr_objects/data_map.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/data_map.cc
g++ -o phaser/codebase/phaser/mr_objects/data_trace.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/data_trace.cc
g++ -o phaser/codebase/phaser/mr_objects/search_component.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/search_component.cc
g++ -o phaser/codebase/phaser/mr_objects/search_array.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/search_array.cc
g++ -o phaser/codebase/phaser/mr_objects/rms_estimate.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/rms_estimate.cc
g++ -o phaser/codebase/phaser/mr_objects/drms_vrms.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/drms_vrms.cc
g++ -o phaser/codebase/phaser/mr_objects/overlap.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/overlap.cc
g++ -o phaser/codebase/phaser/lib/aniso.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/aniso.cc
g++ -o phaser/codebase/phaser/lib/best.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/best.cc
g++ -o phaser/codebase/phaser/lib/consistentDLuz.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/consistentDLuz.cc
g++ -o phaser/codebase/phaser/lib/euler.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/euler.cc
g++ -o phaser/codebase/phaser/lib/eLLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/eLLG.cc
g++ -o phaser/codebase/phaser/lib/factor.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/factor.cc
g++ -o phaser/codebase/phaser/lib/func_ops.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/func_ops.cc
g++ -o phaser/codebase/phaser/lib/is_pointgroup.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/is_pointgroup.cc
g++ -o phaser/codebase/phaser/lib/jiffy.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/jiffy.cc
g++ -o phaser/codebase/phaser/lib/math_alogch.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_alogch.cc
ar rc lib/libphasersrc.a phaser/codebase/phaser/src/Brick.o phaser/codebase/phaser/src/Cluster.o phaser/codebase/phaser/src/Minimizer.o phaser/codebase/phaser/src/Clmn.o phaser/codebase/phaser/src/DataA.o phaser/codebase/phaser/src/DataB.o phaser/codebase/phaser/src/DataMR.o phaser/codebase/phaser/src/Ensemble.o phaser/codebase/phaser/src/EnsembleMAP.o phaser/codebase/phaser/src/EnsemblePDB.o phaser/codebase/phaser/src/Epsilon.o phaser/codebase/phaser/src/FastRot.o phaser/codebase/phaser/src/Gfunction.o phaser/codebase/phaser/src/Hexagonal.o phaser/codebase/phaser/src/Molecule.o phaser/codebase/phaser/src/TraceMol.o phaser/codebase/phaser/src/RefineANO.o phaser/codebase/phaser/src/RefineBase.o phaser/codebase/phaser/src/RefineBase2.o phaser/codebase/phaser/src/RefineMR.o phaser/codebase/phaser/src/RefineGYRE.o phaser/codebase/phaser/src/RefineOCC.o phaser/codebase/phaser/src/SiteListAng.o phaser/codebase/phaser/src/SiteList.o phaser/codebase/phaser/src/SiteListXyz.o phaser/codebase/phaser/src/Sites.o phaser/codebase/phaser/src/LlgcMapSites.o phaser/codebase/phaser/src/SpaceGroup.o phaser/codebase/phaser/src/UnitCell.o phaser/codebase/phaser/src/BinStats.o phaser/codebase/phaser/src/EqualUnity.o phaser/codebase/phaser/src/Integration.o phaser/codebase/phaser/src/RefineSADb.o phaser/codebase/phaser/src/RefineSADc.o phaser/codebase/phaser/src/RefineSADt.o phaser/codebase/phaser/src/RefineSADg.o phaser/codebase/phaser/src/RefineSADh.o phaser/codebase/phaser/src/RefineSADi.o phaser/codebase/phaser/src/RefineSADf.o phaser/codebase/phaser/src/RefineSADp.o phaser/codebase/phaser/src/RefineSADl.o phaser/codebase/phaser/src/RefineSADm.o phaser/codebase/phaser/src/RefineNCS.o phaser/codebase/phaser/src/SAD2a.o phaser/codebase/phaser/src/SAD2c.o phaser/codebase/phaser/src/SAD2s.o phaser/codebase/phaser/src/SAD1.o phaser/codebase/phaser/src/MapEnsemble.o phaser/codebase/phaser/src/MapTraceMol.o phaser/codebase/phaser/src/Solvent.o phaser/codebase/phaser/src/HandEP.o phaser/codebase/phaser/src/ListEditing.o phaser/codebase/phaser/src/Dfactor.o phaser/codebase/phaser/src/Bin.o phaser/codebase/phaser/src/Cubic.o phaser/codebase/phaser/src/Composition.o phaser/codebase/phaser/src/TncsVar.o phaser/codebase/phaser/src/RefineSADs.o phaser/codebase/phaser/src/DataSAD.o phaser/codebase/phaser/src/Patterson.o
g++ -o phaser/codebase/phaser/lib/math_besrat.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_besrat.cc
ranlib lib/libphasersrc.a
g++ -o phaser/codebase/phaser/lib/math_eBesselI0.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_eBesselI0.cc
g++ -o phaser/codebase/phaser/lib/math_eBesselI1.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_eBesselI1.cc
g++ -o phaser/codebase/phaser/lib/math_RiceWoolfson.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_RiceWoolfson.cc
g++ -o phaser/codebase/phaser/lib/math_sim.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_sim.cc
g++ -o phaser/codebase/phaser/lib/math_Gfunc.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_Gfunc.cc
g++ -o phaser/codebase/phaser/lib/math_DLuzzati.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_DLuzzati.cc
g++ -o phaser/codebase/phaser/lib/math_ParabolicCylinderD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_ParabolicCylinderD.cc
g++ -o phaser/codebase/phaser/lib/math_FrenchWilson.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_FrenchWilson.cc
g++ -o phaser/codebase/phaser/lib/math_RiceLLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_RiceLLG.cc
g++ -o phaser/codebase/phaser/lib/math_pIntensity.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_pIntensity.cc
g++ -o phaser/codebase/phaser/lib/math_info.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_info.cc
g++ -o phaser/codebase/phaser/lib/matthewsProb.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/matthewsProb.cc
g++ -o phaser/codebase/phaser/lib/rad2phi.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/rad2phi.cc
g++ -o phaser/codebase/phaser/lib/rmdirs.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/rmdirs.cc
ar rc lib/libphasermr.a phaser/codebase/phaser/mr_objects/mr_solution.o phaser/codebase/phaser/mr_objects/mr_set.o phaser/codebase/phaser/mr_objects/mr_clash.o phaser/codebase/phaser/mr_objects/mr_ndim.o phaser/codebase/phaser/mr_objects/mr_clash.o phaser/codebase/phaser/mr_objects/data_pdb.o phaser/codebase/phaser/mr_objects/data_map.o phaser/codebase/phaser/mr_objects/data_trace.o phaser/codebase/phaser/mr_objects/search_component.o phaser/codebase/phaser/mr_objects/search_array.o phaser/codebase/phaser/mr_objects/rms_estimate.o phaser/codebase/phaser/mr_objects/drms_vrms.o phaser/codebase/phaser/mr_objects/overlap.o
ranlib lib/libphasermr.a
g++ -o phaser/codebase/phaser/lib/rotationgroup.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/rotationgroup.cc
g++ -o phaser/codebase/phaser/lib/rotdist.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/rotdist.cc
g++ -o phaser/codebase/phaser/lib/round.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/round.cc
g++ -o phaser/codebase/phaser/lib/safe_mtz.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/safe_mtz.cc
g++ -o phaser/codebase/phaser/lib/signal.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/signal.cc
g++ -o phaser/codebase/phaser/lib/scattering.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/scattering.cc
g++ -o phaser/codebase/phaser/lib/sg_prior.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/sg_prior.cc
g++ -o phaser/codebase/phaser/lib/sphericalY.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/sphericalY.cc
g++ -o phaser/codebase/phaser/lib/xyzRotMatDeg.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/xyzRotMatDeg.cc
g++ -o phaser/codebase/phaser/lib/xyz_weight.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/xyz_weight.cc
g++ -o phaser/codebase/phaser/lib/fasta2str.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/fasta2str.cc
g++ -o phaser/codebase/phaser/include/data_refl.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/include/data_refl.cc
g++ -o phaser/codebase/phaser/include/data_asu.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/include/data_asu.cc
g++ -o phaser/codebase/phaser/ep_objects/ep_solution.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/ep_solution.cc
g++ -o phaser/codebase/phaser/ep_objects/ep_search.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/ep_search.cc
g++ -o phaser/codebase/phaser/ep_objects/data_atom.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/data_atom.cc
g++ -o phaser/codebase/phaser/ep_objects/data_ep.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/data_ep.cc
g++ -o phaser/codebase/phaser/ep_objects/af_atom.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/af_atom.cc
g++ -o phaser/codebase/phaser/ep_objects/data_wave.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/data_wave.cc
ar rc lib/libphaserlib.a phaser/codebase/phaser/lib/aniso.o phaser/codebase/phaser/lib/best.o phaser/codebase/phaser/lib/consistentDLuz.o phaser/codebase/phaser/lib/euler.o phaser/codebase/phaser/lib/eLLG.o phaser/codebase/phaser/lib/factor.o phaser/codebase/phaser/lib/func_ops.o phaser/codebase/phaser/lib/is_pointgroup.o phaser/codebase/phaser/lib/jiffy.o phaser/codebase/phaser/lib/math_alogch.o phaser/codebase/phaser/lib/math_besrat.o phaser/codebase/phaser/lib/math_eBesselI0.o phaser/codebase/phaser/lib/math_eBesselI1.o phaser/codebase/phaser/lib/math_RiceWoolfson.o phaser/codebase/phaser/lib/math_sim.o phaser/codebase/phaser/lib/math_Gfunc.o phaser/codebase/phaser/lib/math_DLuzzati.o phaser/codebase/phaser/lib/math_ParabolicCylinderD.o phaser/codebase/phaser/lib/math_FrenchWilson.o phaser/codebase/phaser/lib/math_RiceLLG.o phaser/codebase/phaser/lib/math_pIntensity.o phaser/codebase/phaser/lib/math_info.o phaser/codebase/phaser/lib/matthewsProb.o phaser/codebase/phaser/lib/rad2phi.o phaser/codebase/phaser/lib/rmdirs.o phaser/codebase/phaser/lib/rotationgroup.o phaser/codebase/phaser/lib/rotdist.o phaser/codebase/phaser/lib/round.o phaser/codebase/phaser/lib/safe_mtz.o phaser/codebase/phaser/lib/signal.o phaser/codebase/phaser/lib/scattering.o phaser/codebase/phaser/lib/sg_prior.o phaser/codebase/phaser/lib/sphericalY.o phaser/codebase/phaser/lib/xyzRotMatDeg.o phaser/codebase/phaser/lib/xyz_weight.o phaser/codebase/phaser/lib/fasta2str.o
ranlib lib/libphaserlib.a
g++ -o phaser/codebase/phaser/ep_objects/data_xtal.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/data_xtal.cc
g++ -o phaser/codebase/phaser/main/phasermode.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/main/phasermode.cc
g++ -o phaser/codebase/phaser/main/MODE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/main/MODE.cc
ar rc lib/libphaserinc.a phaser/codebase/phaser/include/data_refl.o phaser/codebase/phaser/include/data_asu.o
ranlib lib/libphaserinc.a
g++ -o phaser/ncs/Edge.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/Edge.cpp
g++ -o phaser/ncs/EnsembleSymmetry.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/EnsembleSymmetry.cpp
g++ -o phaser/ncs/LCSTree.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/LCSTree.cpp
g++ -o phaser/ncs/MacromoleculeType.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/MacromoleculeType.cpp
g++ -o phaser/ncs/NCSAssembly.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/NCSAssembly.cpp
g++ -o phaser/ncs/NCSOperator.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/NCSOperator.cpp
g++ -o phaser/ncs/NCSSymmetry.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/NCSSymmetry.cpp
ar rc lib/libphasermain.a phaser/codebase/phaser/main/main.o phaser/codebase/phaser/main/phasermode.o phaser/codebase/phaser/main/MODE.o
ranlib lib/libphasermain.a
g++ -o phaser/ncs/Node.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/Node.cpp
ar rc lib/libphaserep.a phaser/codebase/phaser/ep_objects/ep_solution.o phaser/codebase/phaser/ep_objects/ep_search.o phaser/codebase/phaser/ep_objects/data_atom.o phaser/codebase/phaser/ep_objects/data_ep.o phaser/codebase/phaser/ep_objects/af_atom.o phaser/codebase/phaser/ep_objects/data_wave.o phaser/codebase/phaser/ep_objects/data_xtal.o
ranlib lib/libphaserep.a
g++ -o phaser/ncs/PointGroup.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/PointGroup.cpp
g++ -o phaser/ncs/ReferenceChain.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/ReferenceChain.cpp
g++ -o phaser/ncs/Suffix.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/Suffix.cpp
g++ -o phaser/ncs/SuffixTree.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/ncs/SuffixTree.cpp
g++ -o phaser/codebase/phaser/cctbx_project/iotbx/ccp4_map.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/cctbx_project/iotbx/ccp4_map.cc
ar rc lib/libccp4io.a ccp4io_adaptbx/csymlib.o ccp4io/libccp4/ccp4/library_err.o ccp4io/libccp4/ccp4/library_file.o ccp4io/libccp4/ccp4/library_utils.o ccp4io/libccp4/ccp4/ccp4_array.o ccp4io/libccp4/ccp4/ccp4_parser.o ccp4io/libccp4/ccp4/ccp4_unitcell.o ccp4io/libccp4/ccp4/cvecmat.o ccp4io/libccp4/ccp4/cmtzlib.o ccp4io/libccp4/ccp4/cmap_accessor.o ccp4io/libccp4/ccp4/cmap_close.o ccp4io/libccp4/ccp4/cmap_data.o ccp4io/libccp4/ccp4/cmap_header.o ccp4io/libccp4/ccp4/cmap_labels.o ccp4io/libccp4/ccp4/cmap_open.o ccp4io/libccp4/ccp4/cmap_skew.o ccp4io/libccp4/ccp4/cmap_stats.o ccp4io/libccp4/ccp4/cmap_symop.o ccp4io/mmdb/hybrid_36.o ccp4io/mmdb/mmdb_atom.o ccp4io/mmdb/mmdb_bondmngr.o ccp4io/mmdb/mmdb_chain.o ccp4io/mmdb/mmdb_cifdefs.o ccp4io/mmdb/mmdb_coormngr.o ccp4io/mmdb/mmdb_cryst.o ccp4io/mmdb/mmdb_ficif.o ccp4io/mmdb/mmdb_io_file.o ccp4io/mmdb/mmdb_io_stream.o ccp4io/mmdb/mmdb_machine_.o ccp4io/mmdb/mmdb_manager.o ccp4io/mmdb/mmdb_mask.o ccp4io/mmdb/mmdb_math_align.o ccp4io/mmdb/mmdb_math_bfgsmin.o ccp4io/mmdb/mmdb_math_.o ccp4io/mmdb/mmdb_math_fft.o ccp4io/mmdb/mmdb_math_graph.o ccp4io/mmdb/mmdb_math_linalg.o ccp4io/mmdb/mmdb_math_rand.o ccp4io/mmdb/mmdb_mattype.o ccp4io/mmdb/mmdb_mmcif_.o ccp4io/mmdb/mmdb_model.o ccp4io/mmdb/mmdb_root.o ccp4io/mmdb/mmdb_rwbrook.o ccp4io/mmdb/mmdb_selmngr.o ccp4io/mmdb/mmdb_seqsuperpose.o ccp4io/mmdb/mmdb_symop.o ccp4io/mmdb/mmdb_tables.o ccp4io/mmdb/mmdb_title.o ccp4io/mmdb/mmdb_uddata.o ccp4io/mmdb/mmdb_utils.o ccp4io/mmdb/mmdb_xml_.o ccp4io/ssm/ssm_csia.o ccp4io/ssm/ssm_graph.o ccp4io/ssm/ssm_vxedge.o ccp4io/ssm/ssm_align.o ccp4io/ssm/ssm_superpose.o ccp4io/ssm/ssm_malign.o ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/ccp4_diskio_f.o ccp4io_adaptbx/ccp4_general.o ccp4io_adaptbx/ccp4_general_f.o ccp4io_adaptbx/ccp4_parser_f.o ccp4io_adaptbx/ccp4_program.o ccp4io_adaptbx/ccp4_unitcell_f.o ccp4io_adaptbx/cmaplib_f.o ccp4io_adaptbx/cmtzlib_f.o ccp4io_adaptbx/csymlib_f.o ccp4io_adaptbx/library_f.o ccp4io_adaptbx/printf_wrappers.o
ranlib lib/libccp4io.a
gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hybrid_36_c.c
g++ -o iotbx/pdb/hybrid_36_cpp.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hybrid_36_cpp.cpp
g++ -o iotbx/pdb/utils.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/utils.cpp
g++ -o iotbx/pdb/write_utils.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/write_utils.cpp
g++ -o iotbx/pdb/hierarchy.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy.cpp
g++ -o iotbx/pdb/hierarchy_select.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy_select.cpp
g++ -o iotbx/pdb/hierarchy_atoms.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy_atoms.cpp
ar rc lib/libphasercmap.a phaser/codebase/phaser/cctbx_project/iotbx/ccp4_map.o
ranlib lib/libphasercmap.a
g++ -o iotbx/pdb/construct_hierarchy.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/construct_hierarchy.cpp
g++ -o iotbx/pdb/overall_counts.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/overall_counts.cpp
g++ -o iotbx/pdb/hierarchy_write.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy_write.cpp
g++ -o iotbx/pdb/atom_selection.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/atom_selection.cpp
g++ -o iotbx/pdb/input.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/input.cpp
g++ -o iotbx/pdb/input_write.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/input_write.cpp
g++ -o mmtbx/masks/atom_mask.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/masks/atom_mask.cpp
ar rc lib/libphaserncs.a phaser/ncs/Edge.o phaser/ncs/EnsembleSymmetry.o phaser/ncs/LCSTree.o phaser/ncs/MacromoleculeType.o phaser/ncs/NCSAssembly.o phaser/ncs/NCSOperator.o phaser/ncs/NCSSymmetry.o phaser/ncs/Node.o phaser/ncs/PointGroup.o phaser/ncs/ReferenceChain.o phaser/ncs/Suffix.o phaser/ncs/SuffixTree.o
ranlib lib/libphaserncs.a
g++ -o omptbx/stubs.o -c -pthread -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/omptbx/stubs.cpp
g++ -o lib/libomptbx.so -shared -s -fopenmp omptbx/stubs.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o lib/libboost_filesystem.so -s -fopenmp -pthread -shared boost/libs/filesystem/src/operations.o boost/libs/filesystem/src/path.o boost/libs/filesystem/src/path_traits.o boost/libs/filesystem/src/portability.o boost/libs/filesystem/src/unique_path.o boost/libs/filesystem/src/utf8_codecvt_facet.o boost/libs/filesystem/src/codecvt_error_category.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -s -fopenmp -pthread cctbx/examples/convert_ccp4_symop_lib.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm
g++ -o exe_dev/cctbx.find_distances -s -fopenmp -pthread cctbx/examples/find_distances.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm
g++ -o exe_dev/cctbx.getting_started -s -fopenmp -pthread cctbx/examples/getting_started.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm
g++ -o exe_dev/cctbx.lattice_symmetry -s -fopenmp -pthread cctbx/examples/lattice_symmetry.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm
g++ -o exe_dev/cctbx.sym_equiv_sites -s -fopenmp -pthread cctbx/examples/sym_equiv_sites.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm
g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -s -fopenmp -pthread cctbx/examples/sys_abs_equiv_space_groups.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm
g++ -o fable/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/ext.cpp
g++ -o iotbx/ccp4_map/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/ccp4_map/ext.cpp
g++ -o iotbx/cif/boost_python/cif_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/cif/boost_python/cif_ext.cpp
g++ -o iotbx/detectors/bruker.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/detectors/bruker.cpp
g++ -o iotbx/detectors/bruker_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/detectors/bruker_ext.cpp
g++ -o iotbx/detectors/detectors_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/detectors/detectors_ext.cpp
g++ -o iotbx/detectors/image_divider.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/detectors/image_divider.cpp
g++ -o iotbx/dsn6/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/dsn6/ext.cpp
g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/misc/boost_python/dtrek_ext.cpp
g++ -o lib/libmmtbx_masks.so -shared -s -fopenmp mmtbx/masks/atom_mask.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm
g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/misc/boost_python/scalepack_ext.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/utils/misc.hpp:4:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/str_ref.hpp:4,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/format.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/ext.cpp:4:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/size_t.hpp:12:23: warning: ‘fem::size_t_max’ defined but not used [-Wunused-variable]
   static const size_t size_t_max = std::numeric_limits<size_t>::max();
                       ^
g++ -o iotbx/mtz/batch_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/batch_bpl.cpp
g++ -o iotbx/mtz/column.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/column.cpp
g++ -o lib/libiotbx_pdb.so -shared -s -fopenmp iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
write_version_cc(["exe/phaser"], ["phaser/codebase/phaser/main/main.o"])

Git commit hash: 51b7bd76aa62ba6a7116e9d0cc7885b67780704c
Git commit date: 2021-06-03 15:19:51 +0100
Git svn info: None
Current branch: master
Number of commits of current branch: 7536
Total number of commits of all branches: 7808
Phaser - 2.8.3
g++ -o iotbx/mtz/column_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/column_bpl.cpp
g++ -o/home/phaserbuilder/PhaserNightlyBuild/Current/build/phaser/Version_shared.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/build/phaser/Version_shared.cc
g++ -o iotbx/mtz/crystal.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/crystal.cpp
g++ -o iotbx/mtz/crystal_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/crystal_bpl.cpp
g++ -o iotbx/mtz/dataset.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/dataset.cpp
g++ -o exe/phaser -s -fopenmp -pthread /home/phaserbuilder/PhaserNightlyBuild/Current/build/phaser/Version_shared.o phaser/codebase/phaser/main/main.o -L/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lphaserrun -lphaserio -lphaserkey -lphasersrc -lphasermr -lphaserlib -lphaserinc -lphaserep -lphasermain -lphaserncs -lphasercmap -lccp4io -lcctbx -liotbx_pdb -lmmtbx_masks -lcctbx_sgtbx_asu -lboost_system -lboost_filesystem -lomptbx -lm
g++ -o iotbx/mtz/dataset_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/dataset_bpl.cpp
g++ -o iotbx/mtz/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/ext.cpp
g++ -o iotbx/mtz/object.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/object.cpp
g++ -o iotbx/mtz/object_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/mtz/object_bpl.cpp
g++ -o iotbx/pdb/common_residue_names_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/common_residue_names_bpl.cpp
g++ -o iotbx/pdb/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/ext.cpp
g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy_atom_bpl.cpp
g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy_atoms_bpl.cpp
g++ -o iotbx/pdb/hierarchy_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy_ext.cpp
g++ -o iotbx/pdb/hybrid_36_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hybrid_36_bpl.cpp
g++ -o iotbx/pdb/hybrid_36_fem.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable iotbx/pdb/hybrid_36_fem.cpp
g++ -o iotbx/pdb/input_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/input_bpl.cpp
g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/rna_dna_atom_names_bpl.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr_ref.hpp:5:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr.hpp:4,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/data_of_type.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem.hpp:5,
                 from iotbx/pdb/hybrid_36_fem.cpp:1:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:46:21: warning: ‘fem::byte0’ defined but not used [-Wunused-variable]
   static const char byte0 = zero<char>();
                     ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:50:22: warning: ‘fem::float0’ defined but not used [-Wunused-variable]
   static const float float0 = zero<float>();
                      ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:51:23: warning: ‘fem::double0’ defined but not used [-Wunused-variable]
   static const double double0 = zero<double>();
                       ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:52:28: warning: ‘fem::long_double0’ defined but not used [-Wunused-variable]
   static const long double long_double0 = zero<long double>();
                            ^
g++ -o iotbx/pdb/hybrid_36_fem -s -fopenmp -pthread iotbx/pdb/hybrid_36_fem.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o iotbx/pdb/xray_structure_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/xray_structure_bpl.cpp
g++ -o iotbx/shelx/shelx_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/shelx/shelx_ext.cpp
g++ -o iotbx/wildcard_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/wildcard_ext.cpp
g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/xplor/boost_python/xplor_ext.cpp
g++ -o iotbx/xplor/map_reader.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/xplor/map_reader.cpp
g++ -o iotbx/xplor/map_writer.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/xplor/map_writer.cpp
g++ -o lib/libboost_python.so -shared -s -fopenmp boost/libs/python/src/list.o boost/libs/python/src/long.o boost/libs/python/src/dict.o boost/libs/python/src/tuple.o boost/libs/python/src/str.o boost/libs/python/src/slice.o boost/libs/python/src/converter/from_python.o boost/libs/python/src/converter/registry.o boost/libs/python/src/converter/type_id.o boost/libs/python/src/object/enum.o boost/libs/python/src/object/class.o boost/libs/python/src/object/function.o boost/libs/python/src/object/inheritance.o boost/libs/python/src/object/life_support.o boost/libs/python/src/object/pickle_support.o boost/libs/python/src/errors.o boost/libs/python/src/module.o boost/libs/python/src/converter/builtin_converters.o boost/libs/python/src/converter/arg_to_python_base.o boost/libs/python/src/object/iterator.o boost/libs/python/src/object/stl_iterator.o boost/libs/python/src/object_protocol.o boost/libs/python/src/object_operators.o boost/libs/python/src/wrapper.o boost/libs/python/src/import.o boost/libs/python/src/exec.o boost/libs/python/src/object/function_doc_signature.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib
g++ -o lib/boost_adaptbx_boost_thread_test_ext.so -shared -s -fopenmp boost_adaptbx/tests/boost_thread_test.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so -shared -s -fopenmp boost_adaptbx/graph/breadth_first_search_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so -shared -s -fopenmp boost_adaptbx/graph/clustering_algorithm_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so -shared -s -fopenmp boost_adaptbx/graph/connected_component_algorithm_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_ext.so -shared -s -fopenmp boost_adaptbx/graph/graph_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so -shared -s -fopenmp boost_adaptbx/graph/graph_structure_comparison_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so -shared -s -fopenmp boost_adaptbx/graph/maximum_clique_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_metric_ext.so -shared -s -fopenmp boost_adaptbx/graph/metric_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so -shared -s -fopenmp boost_adaptbx/graph/min_cut_max_flow_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_graph_utility_ext.so -shared -s -fopenmp boost_adaptbx/graph/utility_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so -shared -s -fopenmp boost_adaptbx/tests/python_streambuf_test_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_optional_ext.so -shared -s -fopenmp boost_adaptbx/optional_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_python_hybrid_times_ext.so -shared -s -fopenmp boost_adaptbx/hybrid_times_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_python_meta_ext.so -shared -s -fopenmp boost_adaptbx/meta_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_rational_ext.so -shared -s -fopenmp boost_adaptbx/rational_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/boost_tuple_ext.so -shared -s -fopenmp boost_adaptbx/tuple_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/ccp4io_adaptbx_ext.so -shared -s -fopenmp ccp4io_adaptbx/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lccp4io -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/boost_python/utils.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/boost_python/utils.cpp
g++ -o scitbx/boost_python/slice.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/boost_python/slice.cpp
g++ -o scitbx/array_family/boost_python/utils.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/utils.cpp
g++ -o lib/libiotbx_xplor.so -shared -s -fopenmp iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o lib/cctbx_large_scale_merging_ext.so -shared -s -fopenmp cctbx/examples/merging/large_scale_merging_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/libasymmetric_map.so -shared -s -fopenmp cctbx/maptbx/asymmetric_map.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm
g++ -o lib/fable_ext.so -shared -s -fopenmp fable/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_ccp4_map_ext.so -shared -s -fopenmp iotbx/ccp4_map/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lccp4io -lboost_thread -lboost_system -lboost_python -lm
gcc -o ucif/antlr3/src/antlr3baserecognizer.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3baserecognizer.c
gcc -o ucif/antlr3/src/antlr3basetree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3basetree.c
gcc -o ucif/antlr3/src/antlr3basetreeadaptor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3basetreeadaptor.c
gcc -o ucif/antlr3/src/antlr3bitset.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3bitset.c
gcc -o ucif/antlr3/src/antlr3collections.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3collections.c
gcc -o ucif/antlr3/src/antlr3commontoken.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3commontoken.c
gcc -o ucif/antlr3/src/antlr3commontree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3commontree.c
gcc -o ucif/antlr3/src/antlr3commontreeadaptor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3commontreeadaptor.c
gcc -o ucif/antlr3/src/antlr3commontreenodestream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3commontreenodestream.c
gcc -o ucif/antlr3/src/antlr3convertutf.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3convertutf.c
gcc -o ucif/antlr3/src/antlr3cyclicdfa.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3cyclicdfa.c
gcc -o ucif/antlr3/src/antlr3debughandlers.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3debughandlers.c
gcc -o ucif/antlr3/src/antlr3encodings.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3encodings.c
gcc -o ucif/antlr3/src/antlr3exception.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3exception.c
gcc -o ucif/antlr3/src/antlr3filestream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3filestream.c
gcc -o ucif/antlr3/src/antlr3inputstream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3inputstream.c
gcc -o ucif/antlr3/src/antlr3intstream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3intstream.c
gcc -o ucif/antlr3/src/antlr3lexer.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3lexer.c
gcc -o ucif/antlr3/src/antlr3parser.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3parser.c
gcc -o ucif/antlr3/src/antlr3rewritestreams.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3rewritestreams.c
gcc -o ucif/antlr3/src/antlr3string.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3string.c
gcc -o ucif/antlr3/src/antlr3tokenstream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3tokenstream.c
g++ -o lib/libscitbx_boost_python.so -shared -s -fopenmp -shared -s -fopenmp scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python
gcc -o ucif/antlr3/src/antlr3treeparser.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/src/antlr3treeparser.c
g++ -o ucif/cifParser.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/cifParser.cpp
g++ -o ucif/cifLexer.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DANTLR3_NODEBUGGER -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/antlr3 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif/cifLexer.cpp
g++ -o lib/cctbx_adp_restraints_ext.so -shared -s -fopenmp cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_xray_scattering_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/xray_scattering_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_neutron_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/neutron_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_xray_ext.so -shared -s -fopenmp cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_crystal_ext.so -shared -s -fopenmp cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_miller_ext.so -shared -s -fopenmp cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_xray_observations_ext.so -shared -s -fopenmp cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_henke_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/henke_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_dmtbx_ext.so -shared -s -fopenmp cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_covariance_ext.so -shared -s -fopenmp cctbx/covariance/boost_python/covariance_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_orientation_ext.so -shared -s -fopenmp cctbx/boost_python/orientation_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_asymmetric_map_ext.so -shared -s -fopenmp cctbx/maptbx/asymmetric_map_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_geometry_restraints_ext.so -shared -s -fopenmp cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_covalent_radii_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/covalent_radii_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_masks_ext.so -shared -s -fopenmp cctbx/masks/boost_python/masks_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_chemical_elements_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/chemical_elements_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_french_wilson_ext.so -shared -s -fopenmp cctbx/boost_python/french_wilson_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_emma_ext.so -shared -s -fopenmp cctbx/boost_python/emma_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_wavelengths_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/wavelengths_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_maptbx_ext.so -shared -s -fopenmp cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_translation_search_ext.so -shared -s -fopenmp cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_icsd_radii_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/icsd_radii_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_sgtbx_ext.so -shared -s -fopenmp cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_cif_ext.so -shared -s -fopenmp ucif/antlr3/src/antlr3baserecognizer.o ucif/antlr3/src/antlr3basetree.o ucif/antlr3/src/antlr3basetreeadaptor.o ucif/antlr3/src/antlr3bitset.o ucif/antlr3/src/antlr3collections.o ucif/antlr3/src/antlr3commontoken.o ucif/antlr3/src/antlr3commontree.o ucif/antlr3/src/antlr3commontreeadaptor.o ucif/antlr3/src/antlr3commontreenodestream.o ucif/antlr3/src/antlr3convertutf.o ucif/antlr3/src/antlr3cyclicdfa.o ucif/antlr3/src/antlr3debughandlers.o ucif/antlr3/src/antlr3encodings.o ucif/antlr3/src/antlr3exception.o ucif/antlr3/src/antlr3filestream.o ucif/antlr3/src/antlr3inputstream.o ucif/antlr3/src/antlr3intstream.o ucif/antlr3/src/antlr3lexer.o ucif/antlr3/src/antlr3parser.o ucif/antlr3/src/antlr3rewritestreams.o ucif/antlr3/src/antlr3string.o ucif/antlr3/src/antlr3tokenstream.o ucif/antlr3/src/antlr3treeparser.o iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_statistics_ext.so -shared -s -fopenmp cctbx/boost_python/statistics_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/determine_unit_cell_ext.so -shared -s -fopenmp cctbx/uctbx/determine_unit_cell/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_symmetry_search_ext.so -shared -s -fopenmp cctbx/symmetry_search/boost_python/symmetry_search_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_anharmonic_ext.so -shared -s -fopenmp cctbx/adptbx/boost_python/anharmonic_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_multipolar_ext.so -shared -s -fopenmp cctbx/multipolar/aspherical_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_math_ext.so -shared -s -fopenmp cctbx/math/boost_python/math_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_geometry_ext.so -shared -s -fopenmp cctbx/geometry/boost_python/geometry_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_sgtbx_asu_ext.so -shared -s -fopenmp cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_fp_fdp_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/fp_fdp_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_tiny_pse_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/tiny_pse_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_sasaki_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/sasaki_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_adptbx_ext.so -shared -s -fopenmp cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_merging_ext.so -shared -s -fopenmp cctbx/merging/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_array_family_flex_ext.so -shared -s -fopenmp cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so -shared -s -fopenmp cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/cctbx_uctbx_ext.so -shared -s -fopenmp cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_detectors_bruker_ext.so -shared -s -fopenmp iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_detectors_ext.so -shared -s -fopenmp iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_dsn6_map_ext.so -shared -s -fopenmp iotbx/dsn6/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_dtrek_ext.so -shared -s -fopenmp iotbx/misc/boost_python/dtrek_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/libiotbx_mtz.so -shared -s -fopenmp iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lccp4io -lm -lboost_thread -lboost_system
g++ -o lib/iotbx_pdb_ext.so -shared -s -fopenmp iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_scalepack_ext.so -shared -s -fopenmp iotbx/misc/boost_python/scalepack_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_shelx_ext.so -shared -s -fopenmp iotbx/shelx/shelx_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_wildcard_ext.so -shared -s -fopenmp iotbx/wildcard_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_xplor_ext.so -shared -s -fopenmp iotbx/xplor/boost_python/xplor_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/iotbx_mtz_ext.so -shared -s -fopenmp iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -liotbx_mtz -lcctbx -lccp4io -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/libboost_numpy.so -shared -s -fopenmp boost/libs/python/src/numpy/dtype.o boost/libs/python/src/numpy/matrix.o boost/libs/python/src/numpy/ndarray.o boost/libs/python/src/numpy/numpy.o boost/libs/python/src/numpy/scalars.o boost/libs/python/src/numpy/ufunc.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_python
g++ -o mmtbx/tls/decompose.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/decompose.cpp
g++ -o scitbx/minpack/raw.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/minpack/raw.cpp
gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/slatec/lib_c.c
g++ -o smtbx/refinement/constraints/affine.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/affine.cpp
g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/geometrical_hydrogens.cpp
g++ -o lib/libscitbx_slatec.so -shared -s -fopenmp scitbx/slatec/lib_c.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lm
g++ -o smtbx/refinement/constraints/occupancy.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/occupancy.cpp
g++ -o smtbx/refinement/constraints/reparametrisation.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/reparametrisation.cpp
g++ -o lib/libscitbx_minpack.so -shared -s -fopenmp scitbx/minpack/raw.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lm
g++ -o smtbx/refinement/constraints/rigid.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/rigid.cpp
g++ -o lib/iotbx_pdb_hierarchy_ext.so -shared -s -fopenmp iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/refinement/constraints/same_group.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/same_group.cpp
g++ -o smtbx/refinement/constraints/shared.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/shared.cpp
g++ -o lib/libmmtbx_tls.so -s -fopenmp -pthread -shared mmtbx/tls/decompose.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lm
g++ -o smtbx/refinement/constraints/special_position.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/special_position.cpp
g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/symmetry_equivalent.cpp
g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp
g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp
g++ -o mmtbx/alignment/alignment_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/alignment/alignment_ext.cpp
g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/building/loop_closure/ccd_bpl.cpp
g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/bulk_solvent/bulk_solvent_ext.cpp
g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/bulk_solvent/bulk_solvent.cpp
g++ -o mmtbx/cablam/boost_python/cablam_align_utils_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/cablam/boost_python/cablam_align_utils_ext.cpp
g++ -o mmtbx/den/boost_python/den_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/den/boost_python/den_ext.cpp
g++ -o lib/libsmtbx_refinement_constraints.so -s -fopenmp -pthread -shared smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o mmtbx/secondary_structure/dssp_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/secondary_structure/dssp_ext.cpp
g++ -o mmtbx/dynamics/dynamics_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/dynamics/dynamics_ext.cpp
g++ -o lib/mmtbx_building_loop_closure_ext.so -shared -s -fopenmp mmtbx/building/loop_closure/ccd_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/mmtbx_alignment_ext.so -shared -s -fopenmp mmtbx/alignment/alignment_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/dynamics/dynamics.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/dynamics/dynamics.cpp
g++ -o mmtbx/f_model/f_model_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/f_model/f_model_ext.cpp
g++ -o lib/mmtbx_cablam_align_utils_ext.so -shared -s -fopenmp mmtbx/cablam/boost_python/cablam_align_utils_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry/boost_python/asa_ext.cpp
g++ -o lib/mmtbx_dssp_ext.so -shared -s -fopenmp mmtbx/secondary_structure/dssp_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry/boost_python/clash_ext.cpp
g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry/boost_python/indexing_ext.cpp
g++ -o lib/mmtbx_dynamics_ext.so -shared -s -fopenmp mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry/boost_python/primitive_ext.cpp
g++ -o lib/mmtbx_den_restraints_ext.so -shared -s -fopenmp mmtbx/den/boost_python/den_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry/boost_python/shared_types_ext.cpp
g++ -o lib/mmtbx_geometry_primitive_ext.so -shared -s -fopenmp mmtbx/geometry/boost_python/primitive_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp
g++ -o lib/mmtbx_bulk_solvent_ext.so -shared -s -fopenmp mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/hydrogens/hydrogens_ext.cpp
g++ -o lib/mmtbx_geometry_shared_types_ext.so -shared -s -fopenmp mmtbx/geometry/boost_python/shared_types_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/masks/masks_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/masks/masks_ext.cpp
g++ -o lib/mmtbx_f_model_ext.so -shared -s -fopenmp mmtbx/f_model/f_model_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/max_lik/max_lik_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/max_lik/max_lik_ext.cpp
g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so -shared -s -fopenmp mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/max_lik/max_lik.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/max_lik/max_lik.cpp
g++ -o lib/mmtbx_hydrogens_ext.so -shared -s -fopenmp mmtbx/hydrogens/hydrogens_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/bulk_solvent/mosaic_ext.cpp
g++ -o lib/mmtbx_geometry_indexing_ext.so -shared -s -fopenmp mmtbx/geometry/boost_python/indexing_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/ncs/cartesian_restraints_ext.cpp
g++ -o lib/mmtbx_geometry_clash_ext.so -shared -s -fopenmp mmtbx/geometry/boost_python/clash_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/ncs/tncs_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/ncs/tncs_ext.cpp
g++ -o mmtbx/pair_interaction/interaction_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/pair_interaction/interaction_ext.cpp
g++ -o lib/mmtbx_masks_ext.so -shared -s -fopenmp mmtbx/masks/masks_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp
g++ -o lib/mmtbx_max_lik_ext.so -shared -s -fopenmp mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o reduce/reduce_src/reduce_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/reduce_bpl.cpp
g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so -shared -s -fopenmp mmtbx/ncs/cartesian_restraints_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
gcc -o reduce/reduce_src/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/hybrid_36_c.c
g++ -o reduce/reduce_src/GraphToHoldScores.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/GraphToHoldScores.cpp
g++ -o lib/mmtbx_mosaic_ext.so -shared -s -fopenmp mmtbx/bulk_solvent/mosaic_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o reduce/reduce_src/reduce.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/reduce.cpp
g++ -o lib/mmtbx_ncs_ext.so -shared -s -fopenmp mmtbx/ncs/tncs_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o reduce/reduce_src/CTab.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/CTab.cpp
g++ -o lib/mmtbx_geometry_asa_ext.so -shared -s -fopenmp mmtbx/geometry/boost_python/asa_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o reduce/reduce_src/ElementInfo.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/ElementInfo.cpp
g++ -o reduce/reduce_src/StdResH.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/StdResH.cpp
g++ -o reduce/reduce_src/ResBlk.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/ResBlk.cpp
g++ -o lib/mmtbx_pair_interaction_ext.so -shared -s -fopenmp mmtbx/pair_interaction/interaction_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o reduce/reduce_src/AtomConn.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/AtomConn.cpp
g++ -o reduce/reduce_src/AtomPositions.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/AtomPositions.cpp
g++ -o reduce/reduce_src/DotSph.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/DotSph.cpp
g++ -o reduce/reduce_src/Mover.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/Mover.cpp
g++ -o reduce/reduce_src/Rot.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/Rot.cpp
g++ -o reduce/reduce_src/Rot3Fold.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/Rot3Fold.cpp
g++ -o reduce/reduce_src/RotDonor.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/RotDonor.cpp
g++ -o reduce/reduce_src/FlipMemo.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/FlipMemo.cpp
g++ -o lib/mmtbx_ramachandran_restraints_ext.so -shared -s -fopenmp mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o reduce/reduce_src/CliqueList.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/CliqueList.cpp
g++ -o reduce/reduce_src/AtomDescr.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/AtomDescr.cpp
g++ -o reduce/reduce_src/PDBrec.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/PDBrec.cpp
g++ -o reduce/reduce_src/MoveableNode.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/MoveableNode.cpp
g++ -o reduce/reduce_src/RotAromMethyl.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/RotAromMethyl.cpp
g++ -o reduce/toolclasses/UseCount.o -c -pthread -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses/UseCount.cpp
g++ -o reduce/toolclasses/Point3d.o -c -pthread -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses/Point3d.cpp
g++ -o reduce/toolclasses/utility.o -c -pthread -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses/utility.cpp
g++ -o reduce/toolclasses/column_sprintf.o -c -pthread -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses/column_sprintf.cpp
g++ -o reduce/toolclasses/column_sscanf.o -c -pthread -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses/column_sscanf.cpp
g++ -o reduce/toolclasses/DisjointSets.o -c -pthread -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses/DisjointSets.cpp
g++ -o reduce/libpdb/pdb_read.o -c -pthread -DBOOLPREDEFINED -DHASSSCANFEXTERN -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb/pdb_read.cpp
g++ -o reduce/libpdb/pdb_sprntf.o -c -pthread -DBOOLPREDEFINED -DHASSSCANFEXTERN -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb/pdb_sprntf.cpp
ar rc reduce/lib/libtoolclasses.a reduce/toolclasses/UseCount.o reduce/toolclasses/Point3d.o reduce/toolclasses/utility.o reduce/toolclasses/column_sprintf.o reduce/toolclasses/column_sscanf.o reduce/toolclasses/DisjointSets.o
ranlib reduce/lib/libtoolclasses.a
g++ -o reduce/libpdb/pdb_sscanf.o -c -pthread -DBOOLPREDEFINED -DHASSSCANFEXTERN -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb/pdb_sscanf.cpp
g++ -o reduce/libpdb/pdb_chars.o -c -pthread -DBOOLPREDEFINED -DHASSSCANFEXTERN -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb/pdb_chars.cpp
g++ -o reduce/libpdb/pdb_type.o -c -pthread -DBOOLPREDEFINED -DHASSSCANFEXTERN -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb/pdb_type.cpp
g++ -o reduce/libpdb/pdb++.o -c -pthread -DBOOLPREDEFINED -DHASSSCANFEXTERN -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb/pdb++.cpp
g++ -o reduce/libpdb/pdbinput.o -c -pthread -DBOOLPREDEFINED -DHASSSCANFEXTERN -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb/pdbinput.cpp
g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp
g++ -o mmtbx/rotamer/fit_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/rotamer/fit_ext.cpp
g++ -o mmtbx/rsr/rsr_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/rsr/rsr_ext.cpp
g++ -o mmtbx/scaling/scaling_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/scaling/scaling_ext.cpp
ar rc reduce/lib/libpdb++.a reduce/libpdb/pdb_read.o reduce/libpdb/pdb_sprntf.o reduce/libpdb/pdb_sscanf.o reduce/libpdb/pdb_chars.o reduce/libpdb/pdb_type.o reduce/libpdb/pdb++.o reduce/libpdb/pdbinput.o
ranlib reduce/lib/libpdb++.a
g++ -o mmtbx/scaling/twinning_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/scaling/twinning_bpl.cpp
ar rc reduce/lib/libreducelib.a reduce/reduce_src/hybrid_36_c.o reduce/reduce_src/GraphToHoldScores.o reduce/reduce_src/reduce.o reduce/reduce_src/CTab.o reduce/reduce_src/ElementInfo.o reduce/reduce_src/StdResH.o reduce/reduce_src/ResBlk.o reduce/reduce_src/AtomConn.o reduce/reduce_src/AtomPositions.o reduce/reduce_src/DotSph.o reduce/reduce_src/Mover.o reduce/reduce_src/Rot.o reduce/reduce_src/Rot3Fold.o reduce/reduce_src/RotDonor.o reduce/reduce_src/FlipMemo.o reduce/reduce_src/CliqueList.o reduce/reduce_src/AtomDescr.o reduce/reduce_src/PDBrec.o reduce/reduce_src/MoveableNode.o reduce/reduce_src/RotAromMethyl.o
ranlib reduce/lib/libreducelib.a
g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/scaling/relative_scaling_bpl.cpp
g++ -o lib/mmtbx_reduce_ext.so -shared -s -fopenmp reduce/reduce_src/reduce_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -Lreduce/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/lib -lreducelib -ltoolclasses -lpdb++ -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/scaling/outlier_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/scaling/outlier_bpl.cpp
g++ -o lib/mmtbx_reference_coordinate_ext.so -shared -s -fopenmp mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/secondary_structure/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/secondary_structure/ext.cpp
g++ -o lib/mmtbx_rsr_ext.so -shared -s -fopenmp mmtbx/rsr/rsr_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/tls/decompose_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/decompose_ext.cpp
g++ -o lib/mmtbx_secondary_structure_ext.so -shared -s -fopenmp mmtbx/secondary_structure/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/tls/tls_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/tls_ext.cpp
g++ -o mmtbx/tls/optimise_amplitudes.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/optimise_amplitudes.cpp
g++ -o lib/mmtbx_rotamer_fit_ext.so -shared -s -fopenmp mmtbx/rotamer/fit_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/optimise_amplitudes_ext.cpp
g++ -o mmtbx/tls/utils.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/utils.cpp
g++ -o lib/mmtbx_tls_decompose_ext.so -shared -s -fopenmp mmtbx/tls/decompose_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/tls/utils_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/utils_ext.cpp
g++ -o mmtbx/utils/utils_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/utils/utils_ext.cpp
g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/validation/ramachandran/rama_eval_bpl.cpp
g++ -o lib/mmtbx_scaling_ext.so -shared -s -fopenmp mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o omptbx/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/omptbx/ext.cpp
g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so -shared -s -fopenmp mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o phaser/codebase/phaser/boost_python/phaser_ext.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/phaser_ext.cpp
g++ -o phaser/codebase/phaser/boost_python/phaser_ncs_ext.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/phaser_ncs_ext.cpp
g++ -o lib/omptbx_ext.so -shared -s -fopenmp omptbx/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lomptbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o phaser/codebase/phaser/boost_python/phaser_rotation_ext.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/phaser_rotation_ext.cpp
g++ -o lib/mmtbx_validation_ramachandran_ext.so -shared -s -fopenmp mmtbx/validation/ramachandran/rama_eval_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o phaser/codebase/phaser/boost_python/keywords_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/keywords_bpl.cpp
g++ -o lib/mmtbx_utils_ext.so -shared -s -fopenmp mmtbx/utils/utils_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o phaser/codebase/phaser/boost_python/MRobjects_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/MRobjects_bpl.cpp
g++ -o lib/mmtbx_tls_ext.so -shared -s -fopenmp mmtbx/tls/tls_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o phaser/codebase/phaser/boost_python/EPobjects_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/EPobjects_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/RefineSAD_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/RefineSAD_bpl.cpp
g++ -o lib/mmtbx_tls_utils_ext.so -shared -s -fopenmp mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o phaser/codebase/phaser/boost_python/RefineNCS_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/RefineNCS_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/ProtocolSAD_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/ProtocolSAD_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/Minimizer_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/Minimizer_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/Inputs_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/Inputs_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/Outputs_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/Outputs_bpl.cpp
g++ -o scitbx/array_family/boost_python/flex_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_ext.cpp
g++ -o scitbx/array_family/boost_python/flex_grid.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_grid.cpp
g++ -o scitbx/array_family/boost_python/flex_bool.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_bool.cpp
g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_size_t.cpp
g++ -o scitbx/array_family/boost_python/flex_int.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_int.cpp
g++ -o scitbx/array_family/boost_python/flex_float.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_float.cpp
g++ -o scitbx/array_family/boost_python/flex_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_double_matrix.cpp
g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_complex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_std_string.cpp
g++ -o scitbx/array_family/boost_python/flex_random.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_random.cpp
g++ -o scitbx/array_family/boost_python/flex_sort.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_sort.cpp
g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_histogram.cpp
g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_weighted_histogram.cpp
g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_mean_and_variance.cpp
g++ -o scitbx/array_family/boost_python/flex_median.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_median.cpp
g++ -o lib/phaser_ext.so -shared -s -fopenmp /home/phaserbuilder/PhaserNightlyBuild/Current/build/phaser/Version_shared.o phaser/codebase/phaser/boost_python/phaser_ext.o phaser/codebase/phaser/boost_python/phaser_ncs_ext.o phaser/codebase/phaser/boost_python/phaser_rotation_ext.o phaser/codebase/phaser/boost_python/keywords_bpl.o phaser/codebase/phaser/boost_python/MRobjects_bpl.o phaser/codebase/phaser/boost_python/EPobjects_bpl.o phaser/codebase/phaser/boost_python/RefineSAD_bpl.o phaser/codebase/phaser/boost_python/RefineNCS_bpl.o phaser/codebase/phaser/boost_python/ProtocolSAD_bpl.o phaser/codebase/phaser/boost_python/Minimizer_bpl.o phaser/codebase/phaser/boost_python/Inputs_bpl.o phaser/codebase/phaser/boost_python/Outputs_bpl.o -L/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lphaserrun -lphaserio -lphaserkey -lphasersrc -lphasermr -lphaserlib -lphaserinc -lphaserep -lphasermain -lphaserncs -lphasercmap -lccp4io -lcctbx -liotbx_pdb -lmmtbx_masks -lcctbx_sgtbx_asu -lboost_system -lboost_filesystem -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_linear_interpolation.cpp
g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_vec3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_vec2_double.cpp
g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_vec3_int.cpp
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_size_t.cpp:18:3: warning: ‘scitbx::af::flex<long unsigned int>::type* scitbx::af::boost_python::{anonymous}::from_stl_vector_unsigned(const std::vector<unsigned int>&)’ defined but not used [-Wunused-function]
   from_stl_vector_unsigned(std::vector<unsigned> const& v)
   ^
g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_mat3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp
g++ -o scitbx/array_family/boost_python/loops.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/loops.cpp
g++ -o scitbx/array_family/boost_python/show_sizes.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/show_sizes.cpp
g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/wrap_python.hpp:57:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/prefix.hpp:13,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/args.hpp:8,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python.hpp:11,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy/dtype.hpp:15,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy.hpp:10,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:2:
/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined
 #define _POSIX_C_SOURCE 200112L
 ^
In file included from /usr/include/stdint.h:25:0,
                 from /usr/lib/gcc/x86_64-linux-gnu/5/include/stdint.h:9,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:1:
/usr/include/features.h:228:0: note: this is the location of the previous definition
 # define _POSIX_C_SOURCE 200809L
 ^
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/wrap_python.hpp:57:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/prefix.hpp:13,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/args.hpp:8,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python.hpp:11,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy/dtype.hpp:15,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy.hpp:10,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:2:
/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7/pyconfig.h:1245:0: warning: "_XOPEN_SOURCE" redefined
 #define _XOPEN_SOURCE 600
 ^
In file included from /usr/include/stdint.h:25:0,
                 from /usr/lib/gcc/x86_64-linux-gnu/5/include/stdint.h:9,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:1:
/usr/include/features.h:169:0: note: this is the location of the previous definition
 # define _XOPEN_SOURCE 700
 ^
g++ -o scitbx/array_family/boost_python/shared_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/shared_ext.cpp
g++ -o scitbx/cubicle_neighbors_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/cubicle_neighbors_ext.cpp
g++ -o scitbx/examples/bevington/bevington_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/eigen -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/examples/bevington/bevington_ext.cpp
g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/fftpack/boost_python/fftpack_ext.cpp
g++ -o scitbx/glmtbx/boost_python/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/glmtbx/boost_python/ext.cc
g++ -o scitbx/graphics_utils/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/graphics_utils/ext.cpp
g++ -o lib/scitbx_cubicle_neighbors_ext.so -shared -s -fopenmp scitbx/cubicle_neighbors_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/iso_surface/iso_surface_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/iso_surface/iso_surface_ext.cpp
g++ -o lib/scitbx_array_family_flex_ext.so -shared -s -fopenmp scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm -lboost_numpy
g++ -o scitbx/lbfgs/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgs/ext.cpp
g++ -o lib/scitbx_graphics_utils_ext.so -shared -s -fopenmp scitbx/graphics_utils/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/lbfgs/lbfgs_fem.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable scitbx/lbfgs/lbfgs_fem.cpp
g++ -o lib/scitbx_examples_bevington_ext.so -shared -s -fopenmp scitbx/examples/bevington/bevington_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp
g++ -o lib/scitbx_glmtbx_ext.so -shared -s -fopenmp scitbx/glmtbx/boost_python/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/linalg/boost_python/linalg_ext.cpp
g++ -o scitbx/linalg/boost_python/matrix.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/linalg/boost_python/matrix.cpp
g++ -o lib/scitbx_iso_surface_ext.so -shared -s -fopenmp scitbx/iso_surface/iso_surface_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/linalg/boost_python/cholesky.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/linalg/boost_python/cholesky.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr_ref.hpp:5:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr.hpp:4,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/data_of_type.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/build/include/scitbx/lbfgs_fem.hpp:1,
                 from scitbx/lbfgs/lbfgs_fem.cpp:1:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:46:21: warning: ‘fem::byte0’ defined but not used [-Wunused-variable]
   static const char byte0 = zero<char>();
                     ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:50:22: warning: ‘fem::float0’ defined but not used [-Wunused-variable]
   static const float float0 = zero<float>();
                      ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:52:28: warning: ‘fem::long_double0’ defined but not used [-Wunused-variable]
   static const long double long_double0 = zero<long double>();
                            ^
g++ -o scitbx/linalg/boost_python/householder.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/linalg/boost_python/householder.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/raw.h:9:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb.h:8,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/timer.hpp:21:98: note: #pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.
g++ -o lib/scitbx_fftpack_ext.so -shared -s -fopenmp scitbx/fftpack/boost_python/fftpack_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/linalg/boost_python/svd.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/linalg/boost_python/svd.cpp
g++ -o scitbx/linalg/boost_python/eigensystem.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/linalg/boost_python/eigensystem.cpp
g++ -o lib/scitbx_array_family_shared_ext.so -shared -s -fopenmp scitbx/array_family/boost_python/shared_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm -lboost_numpy
g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/linalg/boost_python/lapack_fem_bpl.cpp
g++ -o lib/scitbx_lbfgsb_ext.so -shared -s -fopenmp scitbx/lbfgsb/boost_python/lbfgsb_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lstbx/boost_python/lstbx_ext.cpp
g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lstbx/boost_python/normal_equations.cpp
g++ -o scitbx/math/boost_python/math_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/math_ext.cpp
g++ -o scitbx/math/boost_python/basic_statistics.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/basic_statistics.cpp
g++ -o scitbx/math/boost_python/gaussian.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/gaussian.cpp
g++ -o scitbx/math/boost_python/golay.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/golay.cpp
g++ -o lib/scitbx_lbfgs_ext.so -shared -s -fopenmp scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/minimum_covering_sphere.cpp
g++ -o lib/scitbx_linalg_ext.so -shared -s -fopenmp scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/principal_axes_of_inertia.cpp
g++ -o scitbx/math/boost_python/row_echelon.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/row_echelon.cpp
g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/tensor_rank_2.cpp
g++ -o scitbx/math/boost_python/chebyshev.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/chebyshev.cpp
g++ -o scitbx/math/boost_python/icosahedron.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/icosahedron.cpp
g++ -o scitbx/math/boost_python/slatec.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/slatec.cpp
g++ -o lib/scitbx_lstbx_normal_equations_ext.so -shared -s -fopenmp scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/math/boost_python/line_search.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/line_search.cpp
g++ -o scitbx/math/boost_python/r3_rotation.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/r3_rotation.cpp
g++ -o scitbx/math/boost_python/resample.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/resample.cpp
g++ -o scitbx/math/boost_python/quadrature.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/quadrature.cpp
g++ -o scitbx/math/boost_python/unimodular_generator.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/unimodular_generator.cpp
g++ -o scitbx/math/boost_python/halton.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/halton.cpp
g++ -o scitbx/math/boost_python/least_squares_plane.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/least_squares_plane.cpp
g++ -o scitbx/math/boost_python/continued_fraction.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/continued_fraction.cpp
g++ -o scitbx/math/boost_python/numeric_limits.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/numeric_limits.cpp
g++ -o scitbx/math/boost_python/distributions.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/distributions.cpp
g++ -o scitbx/math/boost_python/exp_functions.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/exp_functions.cpp
g++ -o scitbx/math/boost_python/zernike.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/zernike.cpp
g++ -o scitbx/math/boost_python/zernike_moments.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/zernike_moments.cpp
g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/2d_zernike_moments.cpp
g++ -o scitbx/math/boost_python/weighted_covariance.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/weighted_covariance.cpp
g++ -o scitbx/math/boost_python/rotation.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/rotation.cpp
g++ -o scitbx/math/boost_python/interpolation.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/interpolation.cpp
g++ -o scitbx/math/boost_python/tetrahedron.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/tetrahedron.cpp
g++ -o scitbx/math/boost_python/angle_derivative.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/boost_python/angle_derivative.cpp
g++ -o scitbx/minpack/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/minpack/ext.cpp
g++ -o scitbx/r3_utils_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/r3_utils_ext.cpp
g++ -o scitbx/random/boost_python/random_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/random/boost_python/random_ext.cpp
g++ -o scitbx/random/boost_python/basic_distributions.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/random/boost_python/basic_distributions.cpp
g++ -o scitbx/rigid_body/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/rigid_body/ext.cpp
g++ -o scitbx/sparse/boost_python/vector.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/boost_python/vector.cpp
g++ -o lib/scitbx_r3_utils_ext.so -shared -s -fopenmp scitbx/r3_utils_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/sparse/boost_python/matrix.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/boost_python/matrix.cpp
g++ -o scitbx/sparse/boost_python/approx_equal.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/boost_python/approx_equal.cpp
g++ -o lib/scitbx_math_ext.so -shared -s -fopenmp scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/scitbx_minpack_ext.so -shared -s -fopenmp scitbx/minpack/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/sparse/boost_python/random.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/boost_python/random.cpp
g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/boost_python/lu_factorization.cpp
g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/boost_python/sparse_ext.cpp
g++ -o scitbx/stl/map_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/stl/map_ext.cpp
g++ -o lib/scitbx_random_ext.so -shared -s -fopenmp scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/stl/set_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/stl/set_ext.cpp
g++ -o scitbx/stl/vector_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/stl/vector_ext.cpp
g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp
g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp
g++ -o lib/scitbx_sparse_ext.so -shared -s -fopenmp scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/suffixtree/boost_python/object_extensions.cpp
g++ -o lib/scitbx_rigid_body_ext.so -shared -s -fopenmp scitbx/rigid_body/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/wigner/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/wigner/ext.cpp
g++ -o lib/scitbx_stl_set_ext.so -shared -s -fopenmp scitbx/stl/set_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/scitbx_suffixtree_shared_ext.so -shared -s -fopenmp scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/ab_initio/ab_initio_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/ab_initio/ab_initio_ext.cpp
g++ -o smtbx/array_family/af_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/array_family/af_ext.cpp
g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/affine.cpp
g++ -o lib/scitbx_stl_vector_ext.so -shared -s -fopenmp scitbx/stl/vector_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/constraints_ext.cpp
g++ -o lib/smtbx_array_family_ext.so -shared -s -fopenmp smtbx/array_family/af_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/direction.cpp
g++ -o lib/smtbx_ab_initio_ext.so -shared -s -fopenmp smtbx/ab_initio/ab_initio_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp
g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp
g++ -o lib/scitbx_wigner_ext.so -shared -s -fopenmp scitbx/wigner/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/occupancy.cpp
g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/reparametrisation.cpp
g++ -o lib/scitbx_suffixtree_single_ext.so -shared -s -fopenmp scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/scitbx_stl_map_ext.so -shared -s -fopenmp scitbx/stl/map_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/rigid.cpp
g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/same_group.cpp
g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp
g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/shared.cpp
g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/special_position.cpp
g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp
g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp
g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp
g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/boost_python/least_squares_ext.cpp
g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/boost_python/weighting_schemes.cpp
g++ -o smtbx/refinement/boost_python/least_squares.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/boost_python/least_squares.cpp
g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/restraints/boost_python/origin_fixing.cpp
g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/restraints/boost_python/restraints_ext.cpp
g++ -o smtbx/stl/map_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/stl/map_ext.cpp
g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/structure_factors/direct/boost_python/ext.cpp
g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/structure_factors/direct/boost_python/standard_xray.cpp
g++ -o lib/std_pair_ext.so -shared -s -fopenmp boost_adaptbx/std_pair_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o tntbx/tntbx/eigensystem_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/tntbx/eigensystem_ext.cpp
g++ -o lib/smtbx_refinement_constraints_ext.so -shared -s -fopenmp smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o lib/smtbx_stl_map_ext.so -shared -s -fopenmp smtbx/stl/map_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o tntbx/tntbx/ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/tntbx/ext.cpp
g++ -o mmtbx/masks/tst_mask.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/masks/tst_mask.cpp
g++ -o reduce/reduce_src/main.o -c -pthread -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/reduce_wwPDB_het_dict.txt"' -DHET_DICTOLD='"/usr/local/reduce_het_dict.txt"' -std=c++11 -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ireduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/toolclasses -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/toolclasses -Ireduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libpdb -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/libpdb /home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/reduce_src/main.cpp
g++ -o lib/tntbx_eigensystem_ext.so -shared -s -fopenmp tntbx/tntbx/eigensystem_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/regression_test_ext.cpp
g++ -o mmtbx/masks/tst_mask -s -fopenmp -pthread mmtbx/masks/tst_mask.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm
g++ -o lib/smtbx_refinement_restraints_ext.so -shared -s -fopenmp smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/array_family/tst_accessors.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_accessors.cpp
g++ -o scitbx/array_family/tst_af_1.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_1.cpp
g++ -o reduce/exe/reduce -s -fopenmp -pthread reduce/reduce_src/main.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -Lreduce/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/reduce/lib -lreducelib -ltoolclasses -lpdb++ -lm
g++ -o scitbx/array_family/tst_af_2.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_2.cpp
g++ -o lib/tntbx_ext.so -shared -s -fopenmp tntbx/tntbx/ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/array_family/tst_af_3.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_3.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_2.cpp:10:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_af_2 -s -fopenmp -pthread scitbx/array_family/tst_af_2.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/tst_af_4.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_4.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_1.cpp:22:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_af_1 -s -fopenmp -pthread scitbx/array_family/tst_af_1.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/boost_python/regression_test_ext.so -shared -s -fopenmp scitbx/array_family/boost_python/regression_test_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python -lm -lboost_numpy
g++ -o scitbx/array_family/tst_af_5.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_5.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_accessors.cpp:15:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_accessors -s -fopenmp -pthread scitbx/array_family/tst_accessors.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/tst_mat3.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_mat3.cpp
g++ -o scitbx/array_family/tst_optional_copy.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_optional_copy.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_3.cpp:16:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_af_3 -s -fopenmp -pthread scitbx/array_family/tst_af_3.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_rectangular_full_packed.cpp
g++ -o scitbx/array_family/tst_rectangular_full_packed -s -fopenmp -pthread scitbx/array_family/tst_rectangular_full_packed.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_ref_matrix_facet.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_5.cpp:9:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:40:8: warning: ‘void {anonymous}::check_false(long int, bool)’ defined but not used [-Wunused-function]
   void check_false(long line, bool stat) {
        ^
g++ -o scitbx/array_family/tst_af_5 -s -fopenmp -pthread scitbx/array_family/tst_af_5.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/array_family/tst_sym_mat3.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_sym_mat3.cpp
g++ -o scitbx/array_family/tst_optional_copy -s -fopenmp -pthread scitbx/array_family/tst_optional_copy.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_unsigned_float_arithmetic.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_mat3.cpp:10:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_mat3 -s -fopenmp -pthread scitbx/array_family/tst_mat3.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o lib/smtbx_structure_factors_direct_ext.so -shared -s -fopenmp smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o scitbx/array_family/tst_vec3.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -Iscitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/array_family -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_vec3.cpp
g++ -o scitbx/error/tst_error.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/error -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/error -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/error /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/error/tst_error.cpp
g++ -o scitbx/error/tst_error -s -fopenmp -pthread scitbx/error/tst_error.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/tst_ref_matrix_facet -s -fopenmp -pthread scitbx/array_family/tst_ref_matrix_facet.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -s -fopenmp -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/fftpack/timing/fftpack_timer.cpp
g++ -o scitbx/fftpack/timing/test0.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/fftpack/timing/test0.cpp
g++ -o scitbx/lbfgs/sdrive_fem.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable scitbx/lbfgs/sdrive_fem.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_sym_mat3.cpp:10:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_sym_mat3 -s -fopenmp -pthread scitbx/array_family/tst_sym_mat3.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/lbfgs/tst_lbfgs.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgs/tst_lbfgs.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_vec3.cpp:9:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_vec3 -s -fopenmp -pthread scitbx/array_family/tst_vec3.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/lbfgsb/dev/driver1.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/dev/driver1.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/raw.h:9:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/dev/driver1.cpp:1:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/timer.hpp:21:98: note: #pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr_ref.hpp:5:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/arr.hpp:4,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/data_of_type.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem.hpp:5,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/build/include/scitbx/lbfgs_fem.hpp:1,
                 from scitbx/lbfgs/sdrive_fem.cpp:1:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:46:21: warning: ‘fem::byte0’ defined but not used [-Wunused-variable]
   static const char byte0 = zero<char>();
                     ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:50:22: warning: ‘fem::float0’ defined but not used [-Wunused-variable]
   static const float float0 = zero<float>();
                      ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/fem/zero.hpp:52:28: warning: ‘fem::long_double0’ defined but not used [-Wunused-variable]
   static const long double long_double0 = zero<long double>();
                            ^
g++ -o scitbx/lbfgs/sdrive_fem -s -fopenmp -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/lbfgsb/dev/driver2.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/dev/driver2.cpp
g++ -o scitbx/lbfgs/tst_lbfgs -s -fopenmp -pthread scitbx/lbfgs/tst_lbfgs.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/lbfgsb/dev/driver3.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/dev/driver3.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/raw.h:9:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/dev/driver2.cpp:1:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/timer.hpp:21:98: note: #pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/raw.h:9:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/lbfgsb/dev/driver3.cpp:1:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/timer.hpp:21:98: note: #pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.
g++ -o scitbx/lbfgsb/dev/driver1 -s -fopenmp -pthread scitbx/lbfgsb/dev/driver1.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/math/tests/tst.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/math/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/math/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/tests /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/math/tests/tst.cpp
g++ -o scitbx/fftpack/timing/fftpack_timer -s -fopenmp -pthread scitbx/fftpack/timing/fftpack_timer.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lomptbx -lm
g++ -o scitbx/matrix/tests/tst_cholesky.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests/tst_cholesky.cpp
g++ -o scitbx/math/tests/tst -s -fopenmp -pthread scitbx/math/tests/tst.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/matrix/tests/tst_givens.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests/tst_givens.cpp
g++ -o scitbx/fftpack/timing/test0 -s -fopenmp -pthread scitbx/fftpack/timing/test0.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lomptbx -lm
g++ -o scitbx/matrix/tests/tst_householder.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests/tst_householder.cpp
g++ -o scitbx/matrix/tests/tst_givens -s -fopenmp -pthread scitbx/matrix/tests/tst_givens.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/matrix/tests/tst_svd.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/matrix/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/matrix/tests/tst_svd.cpp
g++ -o scitbx/lbfgsb/dev/driver2 -s -fopenmp -pthread scitbx/lbfgsb/dev/driver2.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/serialization/tst_base_256.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/serialization -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/serialization -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/serialization /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/serialization/tst_base_256.cpp
g++ -o scitbx/lbfgsb/dev/driver3 -s -fopenmp -pthread scitbx/lbfgsb/dev/driver3.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o scitbx/sparse/tests/tst_sparse.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Iscitbx/sparse/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/scitbx/sparse/tests -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/tests /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/sparse/tests/tst_sparse.cpp
g++ -o lib/smtbx_refinement_least_squares_ext.so -shared -s -fopenmp smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python -lm
g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp
g++ -o scitbx/serialization/tst_base_256 -s -fopenmp -pthread scitbx/serialization/tst_base_256.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp
g++ -o scitbx/matrix/tests/tst_cholesky -s -fopenmp -pthread scitbx/matrix/tests/tst_cholesky.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -pthread -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -Ismtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/smtbx/refinement/constraints -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/refinement/constraints/tests/tst_special_position.cpp
g++ -o scitbx/matrix/tests/tst_svd -s -fopenmp -pthread scitbx/matrix/tests/tst_svd.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/matrix/tests/tst_householder -s -fopenmp -pthread scitbx/matrix/tests/tst_householder.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o scitbx/sparse/tests/tst_sparse -s -fopenmp -pthread scitbx/sparse/tests/tst_sparse.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system
g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -s -fopenmp -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system
g++ -o smtbx/refinement/constraints/tests/tst_special_position -s -fopenmp -pthread smtbx/refinement/constraints/tests/tst_special_position.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system
g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -s -fopenmp -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_4.cpp:12:0:
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:40:8: warning: ‘void {anonymous}::check_false(long int, bool)’ defined but not used [-Wunused-function]
   void check_false(long line, bool stat) {
        ^
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/tst_af_helpers.cpp:44:8: warning: ‘bool {anonymous}::approx_equal(double, double, double)’ defined but not used [-Wunused-function]
   bool approx_equal(double x, double y, double tolerance=1.e-5)
        ^
g++ -o scitbx/array_family/tst_af_4 -s -fopenmp -pthread scitbx/array_family/tst_af_4.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lm
scons: done building targets.
usr+sys time: 23.79 seconds
wall clock time: 9 minutes 53.28 seconds (593.28 seconds total)
scons: Reading SConscript files ...
libtbx.scons: OpenMP is available.
BOOST_VERSION: 107000
libtbx.scons: implicit dependency scan disabled for directory /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost
phaser: Distributed version
phaser: Generating C++ and libtbx.phil defaults files
phaser: Building shared version
scons: done reading SConscript files.
scons: Building targets ...
g++ -o boost_adaptbx/meta_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/meta_ext.cpp
g++ -o boost_adaptbx/optional_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/optional_ext.cpp
g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp
g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/array_family/boost_python/flex_miller_index.cpp
g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/array_family/boost_python/flex_xray_scatterer.cpp
g++ -o phaser/codebase/phaser/main/main.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/main/main.cc
g++ -o phaser/codebase/phaser/run/runANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runANO.cc
g++ -o phaser/codebase/phaser/run/runCCA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runCCA.cc
g++ -o phaser/codebase/phaser/run/runNMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runNMA.cc
g++ -o phaser/codebase/phaser/run/runSCEDS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runSCEDS.cc
g++ -o phaser/codebase/phaser/run/runNMAXYZ.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runNMAXYZ.cc
g++ -o phaser/codebase/phaser/run/runNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runNCS.cc
g++ -o phaser/codebase/phaser/run/runDFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runDFAC.cc
g++ -o phaser/codebase/phaser/run/runMR_ELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_ELLG.cc
g++ -o phaser/codebase/phaser/run/runMR_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_DAT.cc
g++ -o phaser/codebase/phaser/run/runMR_PREP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_PREP.cc
g++ -o phaser/codebase/phaser/run/runMR_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_AUTO.cc
g++ -o phaser/codebase/phaser/run/runMR_ATOM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_ATOM.cc
g++ -o phaser/codebase/phaser/run/runMR_FULL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FULL.cc
g++ -o phaser/codebase/phaser/run/runMR_FAST.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FAST.cc
g++ -o phaser/codebase/phaser/run/runMR_PAK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_PAK.cc
g++ -o phaser/codebase/phaser/run/runMR_RNP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_RNP.cc
g++ -o phaser/codebase/phaser/run/runMR_OCC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_OCC.cc
g++ -o phaser/codebase/phaser/run/runMR_FRF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FRF.cc
g++ -o phaser/codebase/phaser/run/runMR_FTF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FTF.cc
g++ -o phaser/codebase/phaser/run/runMR_GYRE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_GYRE.cc
g++ -o phaser/codebase/phaser/run/runMR_GMBL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_GMBL.cc
g++ -o phaser/codebase/phaser/run/runMR_FUSE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runMR_FUSE.cc
g++ -o phaser/codebase/phaser/run/runEP_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_DAT.cc
g++ -o phaser/codebase/phaser/run/runEP_SAD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_SAD.cc
g++ -o phaser/codebase/phaser/run/runEP_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_AUTO.cc
g++ -o phaser/codebase/phaser/run/runEP_SSD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runEP_SSD.cc
g++ -o phaser/codebase/phaser/run/runSANDBOX.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/run/runSANDBOX.cc
g++ -o phaser/codebase/phaser/io/CCP4base.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/CCP4base.cc
g++ -o phaser/codebase/phaser/io/Output.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/Output.cc
g++ -o phaser/codebase/phaser/io/Memory.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/Memory.cc
g++ -o phaser/codebase/phaser/io/InputMR_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_AUTO.cc
g++ -o phaser/codebase/phaser/io/InputMR_ATOM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_ATOM.cc
g++ -o phaser/codebase/phaser/io/InputMR_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_DAT.cc
g++ -o phaser/codebase/phaser/io/InputANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputANO.cc
g++ -o phaser/codebase/phaser/io/InputMR_ELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_ELLG.cc
g++ -o phaser/codebase/phaser/io/InputMR_FRF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_FRF.cc
g++ -o phaser/codebase/phaser/io/InputMR_FTF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_FTF.cc
g++ -o phaser/codebase/phaser/io/InputMR_PAK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_PAK.cc
g++ -o phaser/codebase/phaser/io/InputMR_RNP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_RNP.cc
g++ -o phaser/codebase/phaser/io/InputMR_OCC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_OCC.cc
g++ -o phaser/codebase/phaser/io/InputNMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputNMA.cc
g++ -o phaser/codebase/phaser/io/InputCCA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputCCA.cc
g++ -o phaser/codebase/phaser/io/InputNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputNCS.cc
g++ -o phaser/codebase/phaser/io/InputDFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputDFAC.cc
g++ -o phaser/codebase/phaser/io/ResultMR_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR_DAT.cc
g++ -o phaser/codebase/phaser/io/ResultANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultANO.cc
g++ -o phaser/codebase/phaser/io/ResultMR_RF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR_RF.cc
g++ -o phaser/codebase/phaser/io/ResultMR_TF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR_TF.cc
g++ -o phaser/codebase/phaser/io/ResultMR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultMR.cc
g++ -o phaser/codebase/phaser/io/ResultGYRE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultGYRE.cc
g++ -o phaser/codebase/phaser/io/ResultCCA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultCCA.cc
g++ -o phaser/codebase/phaser/io/ResultNMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultNMA.cc
g++ -o phaser/codebase/phaser/io/ResultNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultNCS.cc
g++ -o phaser/codebase/phaser/io/ResultDFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultDFAC.cc
g++ -o phaser/codebase/phaser/io/ResultELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultELLG.cc
g++ -o phaser/codebase/phaser/io/PdbHandler.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/PdbHandler.cc
g++ -o phaser/codebase/phaser/io/MtzHandler.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/MtzHandler.cc
g++ -o phaser/codebase/phaser/io/InputEP_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_DAT.cc
g++ -o phaser/codebase/phaser/io/InputEP_SAD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_SAD.cc
g++ -o phaser/codebase/phaser/io/InputEP_AUTO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_AUTO.cc
g++ -o phaser/codebase/phaser/io/ResultEP_DAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultEP_DAT.cc
g++ -o phaser/codebase/phaser/io/ResultEP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultEP.cc
g++ -o phaser/codebase/phaser/io/ResultFile.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultFile.cc
g++ -o phaser/codebase/phaser/io/InputMR_FUSE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputMR_FUSE.cc
g++ -o phaser/codebase/phaser/io/InputEP_SSD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/InputEP_SSD.cc
g++ -o phaser/codebase/phaser/io/ResultSSD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultSSD.cc
g++ -o phaser/codebase/phaser/io/ResultCore.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/io/ResultCore.cc
g++ -o phaser/codebase/phaser/keywords/ATOM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ATOM.cc
g++ -o phaser/codebase/phaser/keywords/BINS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/BINS.cc
g++ -o phaser/codebase/phaser/keywords/BFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/BFAC.cc
g++ -o phaser/codebase/phaser/keywords/BOXS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/BOXS.cc
g++ -o phaser/codebase/phaser/keywords/CELL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/CELL.cc
g++ -o phaser/codebase/phaser/keywords/COMP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/COMP.cc
g++ -o phaser/codebase/phaser/keywords/CRYS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/CRYS.cc
g++ -o phaser/codebase/phaser/keywords/DDM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/DDM.cc
g++ -o phaser/codebase/phaser/keywords/EIGE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/EIGE.cc
g++ -o phaser/codebase/phaser/keywords/ELLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ELLG.cc
g++ -o phaser/codebase/phaser/keywords/ENSE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ENSE.cc
g++ -o phaser/codebase/phaser/keywords/ENM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ENM.cc
g++ -o phaser/codebase/phaser/keywords/FFTS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/FFTS.cc
g++ -o phaser/codebase/phaser/keywords/FIND.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/FIND.cc
g++ -o phaser/codebase/phaser/keywords/FORM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/FORM.cc
g++ -o phaser/codebase/phaser/keywords/HAND.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/HAND.cc
g++ -o phaser/codebase/phaser/keywords/JOBS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/JOBS.cc
g++ -o phaser/codebase/phaser/keywords/KILL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/KILL.cc
g++ -o phaser/codebase/phaser/keywords/LABI.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/LABI.cc
g++ -o phaser/codebase/phaser/keywords/LLGC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/LLGC.cc
g++ -o phaser/codebase/phaser/keywords/LLGM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/LLGM.cc
g++ -o phaser/codebase/phaser/keywords/MACA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACA.cc
g++ -o phaser/codebase/phaser/keywords/MACJ.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACJ.cc
g++ -o phaser/codebase/phaser/keywords/MACM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACM.cc
g++ -o phaser/codebase/phaser/keywords/MACO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACO.cc
g++ -o phaser/codebase/phaser/keywords/MACG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACG.cc
g++ -o phaser/codebase/phaser/keywords/MACS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACS.cc
g++ -o phaser/codebase/phaser/keywords/MACT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/MACT.cc
g++ -o phaser/codebase/phaser/keywords/NMA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/NMA.cc
g++ -o phaser/codebase/phaser/keywords/OCCU.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/OCCU.cc
g++ -o phaser/codebase/phaser/keywords/OUTL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/OUTL.cc
g++ -o phaser/codebase/phaser/keywords/PACK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PACK.cc
g++ -o phaser/codebase/phaser/keywords/PART.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PART.cc
g++ -o phaser/codebase/phaser/keywords/PEAK.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PEAK.cc
g++ -o phaser/codebase/phaser/keywords/PERM.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PERM.cc
g++ -o phaser/codebase/phaser/keywords/PERT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PERT.cc
g++ -o phaser/codebase/phaser/keywords/PURG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/PURG.cc
g++ -o phaser/codebase/phaser/keywords/RESC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/RESC.cc
g++ -o phaser/codebase/phaser/keywords/RESO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/RESO.cc
g++ -o phaser/codebase/phaser/keywords/RFAC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/RFAC.cc
g++ -o phaser/codebase/phaser/keywords/ROOT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ROOT.cc
g++ -o phaser/codebase/phaser/keywords/ROTA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ROTA.cc
g++ -o phaser/codebase/phaser/keywords/SCAT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SCAT.cc
g++ -o phaser/codebase/phaser/keywords/SCED.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SCED.cc
g++ -o phaser/codebase/phaser/keywords/SEAR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SEAR.cc
g++ -o phaser/codebase/phaser/keywords/SGAL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SGAL.cc
g++ -o phaser/codebase/phaser/keywords/SOLP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SOLP.cc
g++ -o phaser/codebase/phaser/keywords/SOLU.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SOLU.cc
g++ -o phaser/codebase/phaser/keywords/SORT.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/SORT.cc
g++ -o phaser/codebase/phaser/keywords/TARG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TARG.cc
g++ -o phaser/codebase/phaser/keywords/TITL.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TITL.cc
g++ -o phaser/codebase/phaser/keywords/TNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TNCS.cc
g++ -o phaser/codebase/phaser/keywords/TOPF.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TOPF.cc
g++ -o phaser/codebase/phaser/keywords/TRAN.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/TRAN.cc
g++ -o phaser/codebase/phaser/keywords/VERB.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/VERB.cc
g++ -o phaser/codebase/phaser/keywords/XYZO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/XYZO.cc
g++ -o phaser/codebase/phaser/keywords/ZSCO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/keywords/ZSCO.cc
g++ -o phaser/codebase/phaser/src/Brick.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Brick.cc
g++ -o phaser/codebase/phaser/src/Cluster.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Cluster.cc
g++ -o phaser/codebase/phaser/src/Minimizer.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Minimizer.cc
g++ -o phaser/codebase/phaser/src/Clmn.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Clmn.cc
g++ -o phaser/codebase/phaser/src/DataA.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataA.cc
g++ -o phaser/codebase/phaser/src/DataB.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataB.cc
g++ -o phaser/codebase/phaser/src/DataMR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataMR.cc
g++ -o phaser/codebase/phaser/src/Ensemble.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Ensemble.cc
g++ -o phaser/codebase/phaser/src/EnsembleMAP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/EnsembleMAP.cc
g++ -o phaser/codebase/phaser/src/EnsemblePDB.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/EnsemblePDB.cc
g++ -o phaser/codebase/phaser/src/Epsilon.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Epsilon.cc
g++ -o phaser/codebase/phaser/src/FastRot.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/FastRot.cc
g++ -o phaser/codebase/phaser/src/Gfunction.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Gfunction.cc
g++ -o phaser/codebase/phaser/src/Hexagonal.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Hexagonal.cc
g++ -o phaser/codebase/phaser/src/Molecule.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Molecule.cc
g++ -o phaser/codebase/phaser/src/TraceMol.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/TraceMol.cc
g++ -o phaser/codebase/phaser/src/RefineANO.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineANO.cc
g++ -o phaser/codebase/phaser/src/RefineBase.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineBase.cc
g++ -o phaser/codebase/phaser/src/RefineBase2.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineBase2.cc
g++ -o phaser/codebase/phaser/src/RefineMR.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineMR.cc
g++ -o phaser/codebase/phaser/src/RefineGYRE.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineGYRE.cc
g++ -o phaser/codebase/phaser/src/RefineOCC.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineOCC.cc
g++ -o phaser/codebase/phaser/src/SiteListAng.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SiteListAng.cc
g++ -o phaser/codebase/phaser/src/SiteList.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SiteList.cc
g++ -o phaser/codebase/phaser/src/SiteListXyz.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SiteListXyz.cc
g++ -o phaser/codebase/phaser/src/Sites.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Sites.cc
g++ -o phaser/codebase/phaser/src/LlgcMapSites.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/LlgcMapSites.cc
g++ -o phaser/codebase/phaser/src/SpaceGroup.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SpaceGroup.cc
g++ -o phaser/codebase/phaser/src/UnitCell.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/UnitCell.cc
g++ -o phaser/codebase/phaser/src/BinStats.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/BinStats.cc
g++ -o phaser/codebase/phaser/src/Integration.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Integration.cc
g++ -o phaser/codebase/phaser/src/RefineSADb.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADb.cc
g++ -o phaser/codebase/phaser/src/RefineSADc.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADc.cc
g++ -o phaser/codebase/phaser/src/RefineSADt.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADt.cc
g++ -o phaser/codebase/phaser/src/RefineSADg.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADg.cc
g++ -o phaser/codebase/phaser/src/RefineSADh.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADh.cc
g++ -o phaser/codebase/phaser/src/RefineSADi.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADi.cc
g++ -o phaser/codebase/phaser/src/RefineSADf.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADf.cc
g++ -o phaser/codebase/phaser/src/RefineSADp.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADp.cc
g++ -o phaser/codebase/phaser/src/RefineSADl.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADl.cc
g++ -o phaser/codebase/phaser/src/RefineSADm.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADm.cc
g++ -o phaser/codebase/phaser/src/RefineNCS.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineNCS.cc
g++ -o phaser/codebase/phaser/src/SAD2a.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD2a.cc
g++ -o phaser/codebase/phaser/src/SAD2c.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD2c.cc
g++ -o phaser/codebase/phaser/src/SAD2s.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD2s.cc
g++ -o phaser/codebase/phaser/src/SAD1.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/SAD1.cc
g++ -o phaser/codebase/phaser/src/MapEnsemble.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/MapEnsemble.cc
g++ -o phaser/codebase/phaser/src/MapTraceMol.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/MapTraceMol.cc
g++ -o phaser/codebase/phaser/src/Solvent.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Solvent.cc
g++ -o phaser/codebase/phaser/src/HandEP.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/HandEP.cc
g++ -o phaser/codebase/phaser/src/ListEditing.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/ListEditing.cc
g++ -o phaser/codebase/phaser/src/Dfactor.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Dfactor.cc
g++ -o phaser/codebase/phaser/src/Bin.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Bin.cc
g++ -o phaser/codebase/phaser/src/Cubic.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Cubic.cc
g++ -o phaser/codebase/phaser/src/Composition.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Composition.cc
g++ -o phaser/codebase/phaser/src/TncsVar.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/TncsVar.cc
g++ -o phaser/codebase/phaser/src/RefineSADs.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/RefineSADs.cc
g++ -o phaser/codebase/phaser/src/DataSAD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/DataSAD.cc
g++ -o phaser/codebase/phaser/src/Patterson.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/src/Patterson.cc
g++ -o phaser/codebase/phaser/mr_objects/mr_solution.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/mr_solution.cc
g++ -o phaser/codebase/phaser/mr_objects/mr_set.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/mr_set.cc
g++ -o phaser/codebase/phaser/mr_objects/mr_ndim.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/mr_ndim.cc
g++ -o phaser/codebase/phaser/mr_objects/data_pdb.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/data_pdb.cc
g++ -o phaser/codebase/phaser/mr_objects/data_map.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/data_map.cc
g++ -o phaser/codebase/phaser/mr_objects/data_trace.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/data_trace.cc
g++ -o phaser/codebase/phaser/mr_objects/rms_estimate.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/rms_estimate.cc
g++ -o phaser/codebase/phaser/mr_objects/overlap.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/mr_objects/overlap.cc
g++ -o phaser/codebase/phaser/lib/consistentDLuz.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/consistentDLuz.cc
g++ -o phaser/codebase/phaser/lib/eLLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/eLLG.cc
g++ -o phaser/codebase/phaser/lib/func_ops.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/func_ops.cc
g++ -o phaser/codebase/phaser/lib/math_alogch.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_alogch.cc
g++ -o phaser/codebase/phaser/lib/math_besrat.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_besrat.cc
g++ -o phaser/codebase/phaser/lib/math_eBesselI0.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_eBesselI0.cc
g++ -o phaser/codebase/phaser/lib/math_eBesselI1.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_eBesselI1.cc
g++ -o phaser/codebase/phaser/lib/math_RiceWoolfson.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_RiceWoolfson.cc
g++ -o phaser/codebase/phaser/lib/math_sim.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_sim.cc
g++ -o phaser/codebase/phaser/lib/math_Gfunc.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_Gfunc.cc
g++ -o phaser/codebase/phaser/lib/math_DLuzzati.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_DLuzzati.cc
g++ -o phaser/codebase/phaser/lib/math_ParabolicCylinderD.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_ParabolicCylinderD.cc
g++ -o phaser/codebase/phaser/lib/math_FrenchWilson.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_FrenchWilson.cc
g++ -o phaser/codebase/phaser/lib/math_RiceLLG.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_RiceLLG.cc
g++ -o phaser/codebase/phaser/lib/math_pIntensity.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_pIntensity.cc
g++ -o phaser/codebase/phaser/lib/math_info.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/math_info.cc
g++ -o phaser/codebase/phaser/lib/scattering.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/lib/scattering.cc
g++ -o phaser/codebase/phaser/include/data_refl.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/include/data_refl.cc
g++ -o phaser/codebase/phaser/ep_objects/ep_solution.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/ep_solution.cc
g++ -o phaser/codebase/phaser/ep_objects/ep_search.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/ep_search.cc
g++ -o phaser/codebase/phaser/ep_objects/data_atom.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/data_atom.cc
g++ -o phaser/codebase/phaser/ep_objects/data_ep.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/data_ep.cc
g++ -o phaser/codebase/phaser/ep_objects/af_atom.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/af_atom.cc
g++ -o phaser/codebase/phaser/ep_objects/data_xtal.o -c -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/include -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/ep_objects/data_xtal.cc
g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/pdb/hierarchy_atoms_bpl.cpp
g++ -o lib/boost_python_meta_ext.so -shared -s -fopenmp boost_adaptbx/meta_ext.o -Llib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/lib -L/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/lib -lboost_thread -lboost_system -lboost_python -lm
g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/optimise_amplitudes_ext.cpp
g++ -o mmtbx/tls/utils_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/tls/utils_ext.cpp
g++ -o phaser/codebase/phaser/boost_python/phaser_ext.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/phaser_ext.cpp
g++ -o phaser/codebase/phaser/boost_python/keywords_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/keywords_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/MRobjects_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/MRobjects_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/EPobjects_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/EPobjects_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/RefineSAD_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/RefineSAD_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/RefineNCS_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/RefineNCS_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/ProtocolSAD_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/ProtocolSAD_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/Minimizer_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/Minimizer_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/Inputs_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/Inputs_bpl.cpp
g++ -o phaser/codebase/phaser/boost_python/Outputs_bpl.o -c -DBOOST_PYTHON_MAX_ARITY=22 -pthread -DBOOST_PYTHON_MAX_BASES=48 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io/libccp4/ccp4 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/codebase/phaser/boost_python/Outputs_bpl.cpp
g++ -o scitbx/array_family/boost_python/flex_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_ext.cpp
g++ -o scitbx/array_family/boost_python/flex_bool.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_bool.cpp
g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_size_t.cpp
g++ -o scitbx/array_family/boost_python/flex_int.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_int.cpp
g++ -o scitbx/array_family/boost_python/flex_float.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_float.cpp
g++ -o scitbx/array_family/boost_python/flex_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_double_matrix.cpp
g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_complex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_std_string.cpp
g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_vec3_double.cpp
/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_size_t.cpp:18:3: warning: ‘scitbx::af::flex<long unsigned int>::type* scitbx::af::boost_python::{anonymous}::from_stl_vector_unsigned(const std::vector<unsigned int>&)’ defined but not used [-Wunused-function]
   from_stl_vector_unsigned(std::vector<unsigned> const& v)
   ^
g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_vec2_double.cpp
g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_vec3_int.cpp
g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_mat3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp
g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/lib/python2.7/site-packages/numpy/core/include /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/wrap_python.hpp:57:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/prefix.hpp:13,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/args.hpp:8,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python.hpp:11,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy/dtype.hpp:15,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy.hpp:10,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:2:
/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined
 #define _POSIX_C_SOURCE 200112L
 ^
In file included from /usr/include/stdint.h:25:0,
                 from /usr/lib/gcc/x86_64-linux-gnu/5/include/stdint.h:9,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:1:
/usr/include/features.h:228:0: note: this is the location of the previous definition
 # define _POSIX_C_SOURCE 200809L
 ^
In file included from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/wrap_python.hpp:57:0,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/detail/prefix.hpp:13,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/args.hpp:8,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python.hpp:11,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy/dtype.hpp:15,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost/boost/python/numpy.hpp:10,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:2:
/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7/pyconfig.h:1245:0: warning: "_XOPEN_SOURCE" redefined
 #define _XOPEN_SOURCE 600
 ^
In file included from /usr/include/stdint.h:25:0,
                 from /usr/lib/gcc/x86_64-linux-gnu/5/include/stdint.h:9,
                 from /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/numpy_bridge.cpp:1:
/usr/include/features.h:169:0: note: this is the location of the previous definition
 # define _XOPEN_SOURCE 700
 ^
g++ -o scitbx/array_family/boost_python/shared_ext.o -c -pthread -DBOOST_PYTHON_MAX_BASES=2 -DUSE_CONDA -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -DNDEBUG -O3 -funroll-loops -ffast-math -DBOOST_ALL_NO_LIB -fopenmp -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/build/include -I/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project -I/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/include/python2.7 /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/array_family/boost_python/shared_ext.cpp
scons: done building targets.
usr+sys time: 12.93 seconds
wall clock time: 3 minutes 50.81 seconds (230.81 seconds total)
  Rebuilding rotarama library skipped. Needs rotamer library.
Python: 2.7.15 "/home/phaserbuilder/PhaserNightlyBuild/Current/conda_base/bin/python2.7"
Compiler: default
Build mode: release
Warning level: 0
Precompiled Headers: False
Static libraries: False
Static exe: False
Scan Boost headers: False
Write full flex_fwd.h files: False
Build Boost.Python extensions: True
Define BOOST_PYTHON_NO_PY_SIGNATURES: False
Define BOOST_PYTHON_BOOL_INT_STRICT: True
Enable OpenMP if possible: True
Boost threads enabled: True
Enable CUDA: False
Use conda: True
Use opt_resources if available: False
Use environment flags: False
Enable C++11: False
command_version_suffix: None
Relocatable paths anchored at: /home/phaserbuilder/PhaserNightlyBuild/Current/build
Top-down list of all modules involved:
  phaser_regression  "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression"
  phaser             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser"
  tntbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/tntbx"
  mmtbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx"
  reduce             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce"
  iotbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx"
  ccp4io+adaptbx     "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io"
                     "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/ccp4io_adaptbx"
  smtbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx"
  ucif               "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/ucif"
  crys3d             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/crys3d"
  cctbx              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx"
  scitbx             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx"
  fable              "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable"
  omptbx             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/omptbx"
  boost+adaptbx      "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/boost"
                     "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx"
  tbxx               "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/tbxx"
  chiltbx            "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/chiltbx"
  libtbx             "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx"
Creating files in build directory: "/home/phaserbuilder/PhaserNightlyBuild/Current/build"
    dispatcher_include_template.sh
    dispatcher_head.sh
    setpaths.sh
    setpaths.csh
    setpaths_all.sh
    setpaths_all.csh
    setpaths_debug.sh
    unsetpaths.sh
    setpaths_debug.csh
    unsetpaths.csh
    SConstruct
    Makefile
    run_tests.csh
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/fable/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/crys3d/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser/phaser/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/command_line"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/boost_adaptbx/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/scitbx/libtbx_refresh.py"
  Generating C++ header files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/scitbx/array_family"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/scitbx/array_family/boost_python"
  Using fable to convert scitbx/lbfgs.f
Updating entry points for scitbx
  1 entries for entry point pytest_randomly.random_seeder
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/cctbx/libtbx_refresh.py"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/cctbx/eltbx"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/cctbx/boost_python"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/crys3d/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/smtbx/libtbx_refresh.py"
  Generating C++ files in:
    "/home/phaserbuilder/PhaserNightlyBuild/Current/build/include/smtbx/boost_python"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/iotbx/libtbx_refresh.py"
  Using fable to convert iotbx/pdb/hybrid_36_f.f
    Writing: iotbx/pdb/hybrid_36_fem.cpp
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/reduce/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/mmtbx/libtbx_refresh.py"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe"
Processing: "/home/phaserbuilder/PhaserNightlyBuild/Current/build/exe_dev"
Done.
Performing actions: build

  removing .pyc files in /home/phaserbuilder/PhaserNightlyBuild/Current/modules, walk? True
  removed 2 files
===== Running in build: run configure.py
===== Running in build: save configure command
===== Running in build: permit execution of config_modules.sh
===== Running in build: Writing additional setup scripts for conda.
===== Running in build: libtbx.scons
===== Running in build: libtbx.scons
===== Running in build: rebuild rotarama
===== Running in .: libtbx.refresh

Bootstrap success: build

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