Regression tests started on Mon Jun 28 00:20:53 2021 ../build/bin/phaser_regression.regression all -o terse_failed -n 7 ## Running all ## Platform: Linux-4.15.0-133-generic-x86_64-with-debian-stretch-sid Date: 2021-06-28 00:21:00.141625 ============================= Test 1: tst_llg_toxd - python ============================= OK ============================= Test 2: tst_llg_toxd - script ============================= OK ========================================= Test 3: tst_rnp_toxd_cutout_mask - python ========================================= OK ========================================= Test 4: tst_rnp_toxd_cutout_mask - script ========================================= OK ==================================== Test 5: tst_anisotropy_toxd - python ==================================== OK ==================================== Test 6: tst_anisotropy_toxd - script ==================================== OK ================================= Test 7: tst_ep_atoms_iod - python ================================= OK ================================= Test 8: tst_ep_atoms_iod - script ================================= OK ================================ Test 9: tst_rnp_barnase - python ================================ {*}: List( [ LLGScore(value = 940.90), LLGScore(value = 625.43), LLGScore(value = 466.82) ] ) != {#}: List( [ LLGScore(value = 940.90) ] ) {*}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) != {#}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) {*}: List( [ List( [ List( [ VRMS(value = 0.598) ] ), List( [ VRMS(value = 0.580) ] ) ] ), List( [ List( [ VRMS(value = 0.579) ] ), List( [ VRMS(value = 0.590) ] ) ] ), List( [ List( [ VRMS(value = 0.998) ] ), List( [ VRMS(value = 0.834) ] ) ] ) ] ) != {#}: List( [ List( [ List( [ VRMS(value = 0.598) ] ), List( [ VRMS(value = 0.580) ] ) ] ) ] ) {*}: Integer(value = 3) != {#}: Integer(value = 1) <3 different from 1> {*}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ), List( [ Bfactor(value = -9.328), Bfactor(value = -5.055), Bfactor(value = 17.022), Bfactor(value = 0.356), Bfactor(value = 1.056) ] ), List( [ Bfactor(value = 20.385), Bfactor(value = 2.548), Bfactor(value = 10.534), Bfactor(value = -4.262), Bfactor(value = 5.075), Bfactor(value = 2.555) ] ) ] ) != {#}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ) ] ) {*}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.21, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.99, 34.88, 44.83 ), translation = ( -0.22903, 0.48069, 0.08952 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 45.92, 179.20, 44.81 ), translation = ( 0.00266, -0.59407, 0.49757 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.47, 48.08, 3.56 ), translation = ( -0.03230, 1.29732, 0.04559 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.39, 179.35, 76.60 ), translation = ( -0.00011, -0.61317, 0.49650 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 231.71, 36.57, 44.18 ), translation = ( -0.22307, 1.51268, 0.09618 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 236.24, 36.63, 44.34 ), translation = ( -0.23347, 0.17225, 0.09824 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 75.23, 179.15, 73.79 ), translation = ( 0.00454, -0.59807, 0.49400 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.80, 48.34, 4.53 ), translation = ( -0.03683, 1.30078, 0.03671 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 90.70, 179.84, 90.69 ), translation = ( 0.00065, -0.61637, 0.49889 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 232.84, 36.57, 44.20 ), translation = ( -0.22661, 1.48750, 0.09385 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 181.25, 52.26, 0.28 ), translation = ( -0.04274, 1.28792, 0.08479 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.21, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ================================= Test 10: tst_rnp_barnase - script ================================= {*}: Integer(value = 3) != {#}: Integer(value = 1) <3 different from 1> {*}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ), List( [ Bfactor(value = -9.328), Bfactor(value = -5.055), Bfactor(value = 17.022), Bfactor(value = 0.356), Bfactor(value = 1.056) ] ), List( [ Bfactor(value = 20.385), Bfactor(value = 2.548), Bfactor(value = 10.534), Bfactor(value = -4.262), Bfactor(value = 5.075), Bfactor(value = 2.555) ] ) ] ) != {#}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ) ] ) {*}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.21, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.99, 34.88, 44.83 ), translation = ( -0.22903, 0.48069, 0.08952 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 45.92, 179.20, 44.81 ), translation = ( 0.00266, -0.59407, 0.49757 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.47, 48.08, 3.56 ), translation = ( -0.03230, 1.29732, 0.04559 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.39, 179.35, 76.60 ), translation = ( -0.00011, -0.61317, 0.49650 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 231.71, 36.57, 44.18 ), translation = ( -0.22307, 1.51268, 0.09618 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 236.24, 36.63, 44.34 ), translation = ( -0.23347, 0.17225, 0.09824 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 75.23, 179.15, 73.79 ), translation = ( 0.00454, -0.59807, 0.49400 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.80, 48.34, 4.53 ), translation = ( -0.03683, 1.30078, 0.03671 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 90.70, 179.84, 90.69 ), translation = ( 0.00065, -0.61637, 0.49889 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 232.84, 36.57, 44.20 ), translation = ( -0.22661, 1.48750, 0.09385 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 181.25, 52.26, 0.28 ), translation = ( -0.04274, 1.28792, 0.08479 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.20, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))) ] ) {*}: List( [ List( [ List( [ VRMS(value = 0.598) ] ), List( [ VRMS(value = 0.580) ] ) ] ), List( [ List( [ VRMS(value = 0.579) ] ), List( [ VRMS(value = 0.590) ] ) ] ), List( [ List( [ VRMS(value = 0.998) ] ), List( [ VRMS(value = 0.834) ] ) ] ) ] ) != {#}: List( [ List( [ List( [ VRMS(value = 0.599) ] ), List( [ VRMS(value = 0.580) ] ) ] ) ] ) {*}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) != {#}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ============================= Test 11: tst_mr_atom - python ============================= OK ============================= Test 12: tst_mr_atom - script ============================= (None, None, 'FOBS', 'SIGFOBS') OK =============================== Test 13: tstb_ep_ybmbp - python =============================== OK =============================== Test 14: tstb_ep_ybmbp - script =============================== OK ===================================== Test 15: tst_auto_beta_prune - python ===================================== OK ===================================== Test 16: tst_auto_beta_prune - script ===================================== OK ============================== Test 17: tst_brf_toxd - python ============================== OK ============================== Test 18: tst_brf_toxd - script ============================== OK ================================= Test 19: tst_tncs_gideon - python ================================= {*}: List( [ Text(value = RFZ=3.9 TFZ=8.5 +TNCS PAK=2 LLG=84 LLG=87 PAK=2 LLG=87) ] ) != {#}: List( [ Text(value = RFZ=3.9 TFZ=8.2 +TNCS PAK=2 LLG=83 LLG=87 PAK=2 LLG=87) ] ) {*}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 274.08, 60.20, 61.19 ), translation = ( -0.60129, -0.49911, -0.39721 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 86.08, 121.90, 240.68 ), translation = ( -1.10751, 0.38013, -0.11481 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 93.93, 58.13, 60.75 ), translation = ( 0.60671, 0.38039, -0.38582 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 265.93, 119.73, 241.25 ), translation = ( 0.10071, -0.49896, -0.10191 ))) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ================================= Test 20: tst_tncs_gideon - script ================================= {*}: List( [ Text(value = RFZ=3.9 TFZ=8.5 +TNCS PAK=2 LLG=84 LLG=87 PAK=2 LLG=87) ] ) != {#}: List( [ Text(value = RFZ=3.9 TFZ=8.2 +TNCS PAK=2 LLG=83 LLG=87 PAK=2 LLG=87) ] ) {*}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 274.08, 60.20, 61.19 ), translation = ( -0.60129, -0.49911, -0.39721 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 86.08, 121.90, 240.68 ), translation = ( -1.10751, 0.38013, -0.11481 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 93.93, 58.13, 60.75 ), translation = ( 0.60671, 0.38039, -0.38582 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 265.94, 119.73, 241.25 ), translation = ( 0.10071, -0.49896, -0.10191 ))) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ======================================== Test 21: tst_auto_overlap_shift - python ======================================== {*}: List( [ Text(value = RFZ=7.5 TFZ=12.5 PAK=0 LLG=250 TFZ==16.4 RFZ=3.9 TFZ=24.8 PAK=1 LLG=520 TFZ==22.4 LLG=690 TFZ==26.4 PAK=1 LLG=690 TFZ==26.4) ] ) != {#}: List( [ Text(value = RFZ=7.5 TFZ=12.5 PAK=0 LLG=250 TFZ==16.4 RFZ=3.9 TFZ=24.8 PAK=1 LLG=520 TFZ==22.4 LLG=690 TFZ==26.4 PAK=1 LLG=689 TFZ==26.2) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ======================================== Test 22: tst_auto_overlap_shift - script ======================================== {*}: List( [ Text(value = RFZ=7.5 TFZ=12.5 PAK=0 LLG=250 TFZ==16.4 RFZ=3.9 TFZ=24.8 PAK=1 LLG=520 TFZ==22.4 LLG=690 TFZ==26.4 PAK=1 LLG=690 TFZ==26.4) ] ) != {#}: List( [ Text(value = RFZ=7.5 TFZ=12.5 PAK=0 LLG=250 TFZ==16.4 RFZ=3.9 TFZ=24.8 PAK=1 LLG=520 TFZ==22.4 LLG=690 TFZ==26.4 PAK=1 LLG=689 TFZ==26.2) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ================================== Test 23: tst_auto_ed_toxd - python ================================== OK ================================== Test 24: tst_auto_ed_toxd - script ================================== OK ================================== Test 25: tst_auto_overlap - python ================================== OK ================================== Test 26: tst_auto_overlap - script ================================== OK ============================== Test 27: tst_btf_toxd - python ============================== OK ============================== Test 28: tst_btf_toxd - script ============================== OK ================================== Test 29: tstl_auto_glykos - python ================================== OK ================================== Test 30: tstl_auto_glykos - script ================================== OK ========================================= Test 31: tstl_auto_polyala_helix - python ========================================= {*}: List( [ LLGScore(value = 39.80), LLGScore(value = 38.99), LLGScore(value = 38.95), LLGScore(value = 38.59), LLGScore(value = 38.51), LLGScore(value = 36.98), LLGScore(value = 36.81), LLGScore(value = 36.68), LLGScore(value = 36.30) ] ) != {#}: List( [ LLGScore(value = 40.48), LLGScore(value = 40.46), LLGScore(value = 39.56), LLGScore(value = 39.36), LLGScore(value = 39.18), LLGScore(value = 38.87), LLGScore(value = 37.93), LLGScore(value = 36.98), LLGScore(value = 36.81) ] ) {*}: List( [ Text(value = RFZ=4.1 TFZ=3.7 PAK=0 LLG=31 TFZ==4.5 LLG=40 TFZ==4.4 PAK=0 LLG=40 TFZ==4.4), Text(value = RFZ=4.3 TFZ=4.0 PAK=0 LLG=29 LLG=39 PAK=0 LLG=39), Text(value = RFZ=4.2 TFZ=3.4 PAK=0 LLG=29 LLG=39 PAK=0 LLG=39), Text(value = RFZ=4.1 TFZ=3.4 PAK=0 LLG=29 LLG=39 PAK=0 LLG=39), Text(value = RFZ=3.8 TFZ=3.9 PAK=0 LLG=28 LLG=39 PAK=0 LLG=39), Text(value = RFZ=4.1 TFZ=3.5 PAK=0 LLG=27 LLG=37 PAK=0 LLG=37), Text(value = RFZ=3.8 TFZ=4.6 PAK=0 LLG=27 LLG=37 PAK=0 LLG=37), Text(value = RFZ=4.3 TFZ=3.0 PAK=0 LLG=28 LLG=37 PAK=0 LLG=37), Text(value = RFZ=4.3 TFZ=3.0 PAK=0 LLG=30 LLG=36 PAK=0 LLG=36) ] ) != {#}: List( [ Text(value = RFZ=4.3 TFZ=3.0 PAK=0 LLG=30 LLG=36 PAK=0 LLG=40 TFZ==4.9), Text(value = RFZ=4.1 TFZ=3.7 PAK=0 LLG=31 TFZ==4.5 LLG=40 TFZ==4.4 PAK=0 LLG=40), Text(value = RFZ=3.8 TFZ=3.9 PAK=0 LLG=28 LLG=39 PAK=0 LLG=40), Text(value = RFZ=4.2 TFZ=3.4 PAK=0 LLG=29 LLG=39 PAK=0 LLG=39), Text(value = RFZ=4.3 TFZ=4.0 PAK=0 LLG=29 LLG=39 PAK=0 LLG=39), Text(value = RFZ=4.1 TFZ=3.4 PAK=0 LLG=29 LLG=39 PAK=0 LLG=39), Text(value = RFZ=4.3 TFZ=3.0 PAK=0 LLG=28 LLG=37 PAK=0 LLG=38), Text(value = RFZ=4.1 TFZ=3.5 PAK=0 LLG=27 LLG=37 PAK=0 LLG=37), Text(value = RFZ=3.8 TFZ=4.6 PAK=0 LLG=27 LLG=37 PAK=0 LLG=37) ] ) {*}: List( [ List( [ Bfactor(value = -11.613) ] ), List( [ Bfactor(value = -13.044) ] ), List( [ Bfactor(value = -12.932) ] ), List( [ Bfactor(value = -12.621) ] ), List( [ Bfactor(value = -12.506) ] ), List( [ Bfactor(value = -11.666) ] ), List( [ Bfactor(value = -11.575) ] ), List( [ Bfactor(value = -11.250) ] ), List( [ Bfactor(value = -7.311) ] ) ] ) != {#}: List( [ List( [ Bfactor(value = -14.112) ] ), List( [ Bfactor(value = -13.181) ] ), List( [ Bfactor(value = -14.052) ] ), List( [ Bfactor(value = -13.345) ] ), List( [ Bfactor(value = -13.234) ] ), List( [ Bfactor(value = -13.055) ] ), List( [ Bfactor(value = -12.340) ] ), List( [ Bfactor(value = -12.000) ] ), List( [ Bfactor(value = -11.575) ] ) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ========================================= Test 32: tstl_auto_polyala_helix - script ========================================= Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 176, in script raise RuntimeError("Error exit from process, errorcode %s" % process.returncode) RuntimeError: Error exit from process, errorcode 134 ERROR: Error exit from process, errorcode 134 =================================== Test 33: tst_btf_beta_blip - python =================================== OK =================================== Test 34: tst_btf_beta_blip - script =================================== OK ================================= Test 35: tst_prune_T0283 - python ================================= OK ================================= Test 36: tst_prune_T0283 - script ================================= OK ================================== Test 37: tst_auto_hibcacb - python ================================== OK ================================== Test 38: tst_auto_hibcacb - script ================================== OK ============================== Test 39: tst_rnp_toxd - python ============================== OK ============================== Test 40: tst_rnp_toxd - script ============================== OK =================================== Test 41: tst_brf_beta_blip - python =================================== OK =================================== Test 42: tst_brf_beta_blip - script =================================== OK ================================= Test 43: tstb_ep_rusti_s - python ================================= OK ================================= Test 44: tstb_ep_rusti_s - script ================================= OK =================================== Test 45: tst_ptf_1bik_toxd - python =================================== OK =================================== Test 46: tst_ptf_1bik_toxd - script =================================== OK ==================================== Test 47: tst_anisotropy_iod - python ==================================== OK ==================================== Test 48: tst_anisotropy_iod - script ==================================== OK ======================================= Test 49: tst_ep_partial_ix_iod - python ======================================= Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ======================================= Test 50: tst_ep_partial_ix_iod - script ======================================= OK =========================== Test 51: tst_sceds - python =========================== OK =========================== Test 52: tst_sceds - script =========================== OK ===================================== Test 53: tstb_ep_auto_trypse - python ===================================== OK ===================================== Test 54: tstb_ep_auto_trypse - script ===================================== OK ===================================== Test 55: tstl_auto_beta_blip - python ===================================== OK ===================================== Test 56: tstl_auto_beta_blip - script ===================================== OK ========================================== Test 57: tst_ep_atoms_partial_iod - python ========================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ========================================== Test 58: tst_ep_atoms_partial_iod - script ========================================== OK ============================== Test 59: tst_pak_toxd - python ============================== OK ============================== Test 60: tst_pak_toxd - script ============================== OK ================================ Test 61: tstb_ep_sav_cl - python ================================ OK ================================ Test 62: tstb_ep_sav_cl - script ================================ OK ==================================== Test 63: tst_gyre_beta_blip - python ==================================== OK ==================================== Test 64: tst_gyre_beta_blip - script ==================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 188, in script report = input.evaluate( input = input, result = result, prefix = prefix ) File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_phaser_keyword.py", line 1459, in evaluate disable_tests_in = self.disable_tests_in, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_reporter.py", line 13, in create section = r( input = input, result = result, prefix = prefix ) File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_reporter.py", line 232, in gyre_rottra if len( s.findall( result.getDotRlist().unparse() ) ) > 0: AttributeError: 'ResultGYRE' object has no attribute 'getDotRlist' ERROR: 'ResultGYRE' object has no attribute 'getDotRlist' ========================================== Test 65: tst_anisotropy_beta_blip - python ========================================== OK ========================================== Test 66: tst_anisotropy_beta_blip - script ========================================== OK ============================== Test 67: tstl_frf_iod - python ============================== OK ============================== Test 68: tstl_frf_iod - script ============================== OK ===================================== Test 69: tstb_ep_sav_ca_s_cl - python ===================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ===================================== Test 70: tstb_ep_sav_ca_s_cl - script ===================================== OK ============================== Test 71: tst_ftf_toxd - python ============================== OK ============================== Test 72: tst_ftf_toxd - script ============================== OK =============================== Test 73: tst_auto_toxd - python =============================== OK =============================== Test 74: tst_auto_toxd - script =============================== OK ============================== Test 75: tst_ptf_toxd - python ============================== OK ============================== Test 76: tst_ptf_toxd - script ============================== OK ================================ Test 77: tstb_ep_trypse - python ================================ Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ================================ Test 78: tstb_ep_trypse - script ================================ OK ================================= Test 79: tst_mr_atom_pdb - python ================================= OK ================================= Test 80: tst_mr_atom_pdb - script ================================= (None, None, 'FOBS', 'SIGFOBS') OK ============================================ Test 81: tst_mr_atom_fullsearch_pdb - python ============================================ OK ============================================ Test 82: tst_mr_atom_fullsearch_pdb - script ============================================ (None, None, 'FOBS', 'SIGFOBS') OK ===================================== Test 83: tstl_fast_beta_blip - python ===================================== {*}: List( [ List( [ List( [ VRMS(value = 0.687) ] ), List( [ VRMS(value = 0.826) ] ) ] ) ] ) != {#}: List( [ List( [ List( [ VRMS(value = 0.701) ] ), List( [ VRMS(value = 0.879) ] ) ] ) ] ) {*}: List( [ Text(value = RFZ=5.8 TFZ=12.4 PAK=0 LLG=180 TFZ==15.3 RFZ=5.4 TFZ=22.5 PAK=0 LLG=833 TFZ==26.6 LLG=1052 TFZ==30.1 PAK=0 LLG=1052 TFZ==30.1) ] ) != {#}: List( [ Text(value = RFZ=5.8 TFZ=12.4 PAK=0 LLG=180 TFZ==15.3 RFZ=5.4 TFZ=22.5 PAK=0 LLG=833 TFZ==26.6 LLG=1053 TFZ==30.1 PAK=0 LLG=1053 TFZ==30.2) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ===================================== Test 84: tstl_fast_beta_blip - script ===================================== {*}: List( [ Text(value = RFZ=5.8 TFZ=12.4 PAK=0 LLG=180 TFZ==15.3 RFZ=5.4 TFZ=22.5 PAK=0 LLG=833 TFZ==26.6 LLG=1052 TFZ==30.1 PAK=0 LLG=1052 TFZ==30.1) ] ) != {#}: List( [ Text(value = RFZ=5.8 TFZ=12.4 PAK=0 LLG=180 TFZ==15.3 RFZ=5.4 TFZ=22.5 PAK=0 LLG=833 TFZ==26.6 LLG=1053 TFZ==30.1 PAK=0 LLG=1053 TFZ==30.2) ] ) {*}: List( [ List( [ List( [ VRMS(value = 0.687) ] ), List( [ VRMS(value = 0.826) ] ) ] ) ] ) != {#}: List( [ List( [ List( [ VRMS(value = 0.700) ] ), List( [ VRMS(value = 0.881) ] ) ] ) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7536, SHA-1: 51b7bd7... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ============================ Test 85: tstb_ep_p9 - python ============================ OK ============================ Test 86: tstb_ep_p9 - script ============================ OK ====================================== Test 87: tst_rnp_no_bref_toxd - python ====================================== OK ====================================== Test 88: tst_rnp_no_bref_toxd - script ====================================== OK ============================== Test 89: tst_frf_toxd - python ============================== OK ============================== Test 90: tst_frf_toxd - script ============================== OK ==================================== Test 91: tst_ep_partial_iod - python ==================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ==================================== Test 92: tst_ep_partial_iod - script ==================================== OK ================================ Test 93: tstb_ep_apt_br - python ================================ OK ================================ Test 94: tstb_ep_apt_br - script ================================ OK ================================= Test 95: tstb_ep_ssadins - python ================================= OK ================================= Test 96: tstb_ep_ssadins - script ================================= OK ================================ Test 97: tst_prune_nagt - python ================================ OK ================================ Test 98: tst_prune_nagt - script ================================ OK ==================================== Test 99: tstb_ep_rusti_cu_s - python ==================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuild/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ===================================== Test 100: tstb_ep_rusti_cu_s - script ===================================== OK SUMMARY of tests: 1: tst_llg_toxd - python - OK 2: tst_llg_toxd - script - OK 3: tst_rnp_toxd_cutout_mask - python - OK 4: tst_rnp_toxd_cutout_mask - script - OK 5: tst_anisotropy_toxd - python - OK 6: tst_anisotropy_toxd - script - OK 7: tst_ep_atoms_iod - python - OK 8: tst_ep_atoms_iod - script - OK 9: tst_rnp_barnase - python - ERROR (6 failures, 0 unknowns) 10: tst_rnp_barnase - script - ERROR (5 failures, 0 unknowns) 11: tst_mr_atom - python - OK 12: tst_mr_atom - script - OK 13: tstb_ep_ybmbp - python - OK 14: tstb_ep_ybmbp - script - OK 15: tst_auto_beta_prune - python - OK 16: tst_auto_beta_prune - script - OK 17: tst_brf_toxd - python - OK 18: tst_brf_toxd - script - OK 19: tst_tncs_gideon - python - ERROR (2 failures, 0 unknowns) 20: tst_tncs_gideon - script - ERROR (2 failures, 0 unknowns) 21: tst_auto_overlap_shift - python - ERROR (1 failures, 0 unknowns) 22: tst_auto_overlap_shift - script - ERROR (1 failures, 0 unknowns) 23: tst_auto_ed_toxd - python - OK 24: tst_auto_ed_toxd - script - OK 25: tst_auto_overlap - python - OK 26: tst_auto_overlap - script - OK 27: tst_btf_toxd - python - OK 28: tst_btf_toxd - script - OK 29: tstl_auto_glykos - python - OK 30: tstl_auto_glykos - script - OK 31: tstl_auto_polyala_helix - python - ERROR (3 failures, 0 unknowns) 32: tstl_auto_polyala_helix - script - ERROR (Error exit from process, errorcode 134) 33: tst_btf_beta_blip - python - OK 34: tst_btf_beta_blip - script - OK 35: tst_prune_T0283 - python - OK 36: tst_prune_T0283 - script - OK 37: tst_auto_hibcacb - python - OK 38: tst_auto_hibcacb - script - OK 39: tst_rnp_toxd - python - OK 40: tst_rnp_toxd - script - OK 41: tst_brf_beta_blip - python - OK 42: tst_brf_beta_blip - script - OK 43: tstb_ep_rusti_s - python - OK 44: tstb_ep_rusti_s - script - OK 45: tst_ptf_1bik_toxd - python - OK 46: tst_ptf_1bik_toxd - script - OK 47: tst_anisotropy_iod - python - OK 48: tst_anisotropy_iod - script - OK 49: tst_ep_partial_ix_iod - python - ERROR (Error exit from process) 50: tst_ep_partial_ix_iod - script - OK 51: tst_sceds - python - OK 52: tst_sceds - script - OK 53: tstb_ep_auto_trypse - python - OK 54: tstb_ep_auto_trypse - script - OK 55: tstl_auto_beta_blip - python - OK 56: tstl_auto_beta_blip - script - OK 57: tst_ep_atoms_partial_iod - python - ERROR (Error exit from process) 58: tst_ep_atoms_partial_iod - script - OK 59: tst_pak_toxd - python - OK 60: tst_pak_toxd - script - OK 61: tstb_ep_sav_cl - python - OK 62: tstb_ep_sav_cl - script - OK 63: tst_gyre_beta_blip - python - OK 64: tst_gyre_beta_blip - script - ERROR ('ResultGYRE' object has no attribute 'getDotRlist') 65: tst_anisotropy_beta_blip - python - OK 66: tst_anisotropy_beta_blip - script - OK 67: tstl_frf_iod - python - OK 68: tstl_frf_iod - script - OK 69: tstb_ep_sav_ca_s_cl - python - ERROR (Error exit from process) 70: tstb_ep_sav_ca_s_cl - script - OK 71: tst_ftf_toxd - python - OK 72: tst_ftf_toxd - script - OK 73: tst_auto_toxd - python - OK 74: tst_auto_toxd - script - OK 75: tst_ptf_toxd - python - OK 76: tst_ptf_toxd - script - OK 77: tstb_ep_trypse - python - ERROR (Error exit from process) 78: tstb_ep_trypse - script - OK 79: tst_mr_atom_pdb - python - OK 80: tst_mr_atom_pdb - script - OK 81: tst_mr_atom_fullsearch_pdb - python - OK 82: tst_mr_atom_fullsearch_pdb - script - OK 83: tstl_fast_beta_blip - python - ERROR (2 failures, 0 unknowns) 84: tstl_fast_beta_blip - script - ERROR (2 failures, 0 unknowns) 85: tstb_ep_p9 - python - OK 86: tstb_ep_p9 - script - OK 87: tst_rnp_no_bref_toxd - python - OK 88: tst_rnp_no_bref_toxd - script - OK 89: tst_frf_toxd - python - OK 90: tst_frf_toxd - script - OK 91: tst_ep_partial_iod - python - ERROR (Error exit from process) 92: tst_ep_partial_iod - script - OK 93: tstb_ep_apt_br - python - OK 94: tstb_ep_apt_br - script - OK 95: tstb_ep_ssadins - python - OK 96: tstb_ep_ssadins - script - OK 97: tst_prune_nagt - python - OK 98: tst_prune_nagt - script - OK 99: tstb_ep_rusti_cu_s - python - ERROR (Error exit from process) 100: tstb_ep_rusti_cu_s - script - OK All tests status: ERROR ## Test suite all finished ## None