Regression tests started on Mon Jun 28 04:20:50 2021 ../build/bin/phaser_regression.regression all -o terse_failed -n 7 ## Running all ## Platform: Linux-4.15.0-133-generic-x86_64-with-debian-stretch-sid Date: 2021-06-28 04:20:57.554212 =================================== Test 1: tstb_ep_rusti_cu_s - python =================================== OK =================================== Test 2: tstb_ep_rusti_cu_s - script =================================== OK ========================================= Test 3: tst_anisotropy_beta_blip - python ========================================= OK ========================================= Test 4: tst_anisotropy_beta_blip - script ========================================= OK ========================================= Test 5: tst_rnp_toxd_cutout_mask - python ========================================= OK ========================================= Test 6: tst_rnp_toxd_cutout_mask - script ========================================= OK ================================ Test 7: tstb_ep_ssadins - python ================================ OK ================================ Test 8: tstb_ep_ssadins - script ================================ OK ==================================== Test 9: tstl_auto_beta_blip - python ==================================== OK ===================================== Test 10: tstl_auto_beta_blip - script ===================================== OK ================================ Test 11: tst_prune_nagt - python ================================ OK ================================ Test 12: tst_prune_nagt - script ================================ OK ================================== Test 13: tst_ep_atoms_iod - python ================================== OK ================================== Test 14: tst_ep_atoms_iod - script ================================== OK ============================== Test 15: tst_frf_toxd - python ============================== OK ============================== Test 16: tst_frf_toxd - script ============================== OK ======================================= Test 17: tst_ep_partial_ix_iod - python ======================================= Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ======================================= Test 18: tst_ep_partial_ix_iod - script ======================================= OK ================================ Test 19: tstb_ep_sav_cl - python ================================ {*}: List( [ Text(value = CA), Text(value = CL) ] ) != {#}: List( [ Text(value = CL), Text(value = CA) ] ) {*}: List( [ ScatteringFactor(value = 1.29), ScatteringFactor(value = 0.70) ] ) != {#}: List( [ ScatteringFactor(value = 0.70), ScatteringFactor(value = 1.29) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ================================ Test 20: tstb_ep_sav_cl - script ================================ {*}: List( [ Text(value = CA), Text(value = CL) ] ) != {#}: List( [ Text(value = CL), Text(value = CA) ] ) {*}: List( [ ScatteringFactor(value = 1.29), ScatteringFactor(value = 0.70) ] ) != {#}: List( [ ScatteringFactor(value = 0.70), ScatteringFactor(value = 1.29) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ============================== Test 21: tst_rnp_toxd - python ============================== OK ============================== Test 22: tst_rnp_toxd - script ============================== OK =================================== Test 23: tst_btf_beta_blip - python =================================== OK =================================== Test 24: tst_btf_beta_blip - script =================================== OK =================================== Test 25: tst_brf_beta_blip - python =================================== OK =================================== Test 26: tst_brf_beta_blip - script =================================== OK ===================================== Test 27: tstl_fast_beta_blip - python ===================================== OK ===================================== Test 28: tstl_fast_beta_blip - script ===================================== OK ===================================== Test 29: tst_anisotropy_toxd - python ===================================== OK ===================================== Test 30: tst_anisotropy_toxd - script ===================================== OK ============================== Test 31: tstl_frf_iod - python ============================== OK ============================== Test 32: tstl_frf_iod - script ============================== OK ================================== Test 33: tst_auto_ed_toxd - python ================================== OK ================================== Test 34: tst_auto_ed_toxd - script ================================== OK ============================== Test 35: tst_brf_toxd - python ============================== OK ============================== Test 36: tst_brf_toxd - script ============================== OK ====================================== Test 37: tst_rnp_no_bref_toxd - python ====================================== OK ====================================== Test 38: tst_rnp_no_bref_toxd - script ====================================== OK ============================== Test 39: tst_llg_toxd - python ============================== OK ============================== Test 40: tst_llg_toxd - script ============================== OK ================================= Test 41: tst_rnp_barnase - python ================================= {*}: List( [ LLGScore(value = 940.90), LLGScore(value = 625.43), LLGScore(value = 466.82) ] ) != {#}: List( [ LLGScore(value = 940.90) ] ) {*}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) != {#}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) {*}: List( [ List( [ List( [ VRMS(value = 0.598) ] ), List( [ VRMS(value = 0.580) ] ) ] ), List( [ List( [ VRMS(value = 0.579) ] ), List( [ VRMS(value = 0.590) ] ) ] ), List( [ List( [ VRMS(value = 0.998) ] ), List( [ VRMS(value = 0.834) ] ) ] ) ] ) != {#}: List( [ List( [ List( [ VRMS(value = 0.598) ] ), List( [ VRMS(value = 0.580) ] ) ] ) ] ) {*}: Integer(value = 3) != {#}: Integer(value = 1) <3 different from 1> {*}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ), List( [ Bfactor(value = -9.328), Bfactor(value = -5.055), Bfactor(value = 17.022), Bfactor(value = 0.356), Bfactor(value = 1.056) ] ), List( [ Bfactor(value = 20.385), Bfactor(value = 2.548), Bfactor(value = 10.534), Bfactor(value = -4.262), Bfactor(value = 5.075), Bfactor(value = 2.555) ] ) ] ) != {#}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ) ] ) {*}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.21, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.99, 34.88, 44.83 ), translation = ( -0.22903, 0.48069, 0.08952 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 45.92, 179.20, 44.81 ), translation = ( 0.00266, -0.59407, 0.49757 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.47, 48.08, 3.56 ), translation = ( -0.03230, 1.29732, 0.04559 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.39, 179.35, 76.60 ), translation = ( -0.00011, -0.61317, 0.49650 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 231.71, 36.57, 44.18 ), translation = ( -0.22307, 1.51268, 0.09618 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 236.24, 36.63, 44.34 ), translation = ( -0.23347, 0.17225, 0.09824 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 75.23, 179.15, 73.79 ), translation = ( 0.00454, -0.59807, 0.49400 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.80, 48.34, 4.53 ), translation = ( -0.03683, 1.30078, 0.03671 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 90.70, 179.84, 90.69 ), translation = ( 0.00065, -0.61637, 0.49889 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 232.84, 36.57, 44.20 ), translation = ( -0.22661, 1.48750, 0.09385 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 181.25, 52.26, 0.28 ), translation = ( -0.04274, 1.28792, 0.08479 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.21, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ================================= Test 42: tst_rnp_barnase - script ================================= {*}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ), List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) != {#}: List( [ List( [ Text(value = barnase), Text(value = barstar) ] ) ] ) {*}: List( [ List( [ List( [ VRMS(value = 0.598) ] ), List( [ VRMS(value = 0.580) ] ) ] ), List( [ List( [ VRMS(value = 0.579) ] ), List( [ VRMS(value = 0.590) ] ) ] ), List( [ List( [ VRMS(value = 0.998) ] ), List( [ VRMS(value = 0.834) ] ) ] ) ] ) != {#}: List( [ List( [ List( [ VRMS(value = 0.599) ] ), List( [ VRMS(value = 0.580) ] ) ] ) ] ) {*}: Integer(value = 3) != {#}: Integer(value = 1) <3 different from 1> {*}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ), List( [ Bfactor(value = -9.328), Bfactor(value = -5.055), Bfactor(value = 17.022), Bfactor(value = 0.356), Bfactor(value = 1.056) ] ), List( [ Bfactor(value = 20.385), Bfactor(value = 2.548), Bfactor(value = 10.534), Bfactor(value = -4.262), Bfactor(value = 5.075), Bfactor(value = 2.555) ] ) ] ) != {#}: List( [ List( [ Bfactor(value = -4.861), Bfactor(value = -3.673), Bfactor(value = 14.354), Bfactor(value = 5.476), Bfactor(value = -5.000), Bfactor(value = 1.962) ] ) ] ) {*}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.21, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.99, 34.88, 44.83 ), translation = ( -0.22903, 0.48069, 0.08952 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 45.92, 179.20, 44.81 ), translation = ( 0.00266, -0.59407, 0.49757 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.47, 48.08, 3.56 ), translation = ( -0.03230, 1.29732, 0.04559 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.39, 179.35, 76.60 ), translation = ( -0.00011, -0.61317, 0.49650 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 231.71, 36.57, 44.18 ), translation = ( -0.22307, 1.51268, 0.09618 ))), Solution(Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 236.24, 36.63, 44.34 ), translation = ( -0.23347, 0.17225, 0.09824 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 75.23, 179.15, 73.79 ), translation = ( 0.00454, -0.59807, 0.49400 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.80, 48.34, 4.53 ), translation = ( -0.03683, 1.30078, 0.03671 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 90.70, 179.84, 90.69 ), translation = ( 0.00065, -0.61637, 0.49889 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 232.84, 36.57, 44.20 ), translation = ( -0.22661, 1.48750, 0.09385 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 181.25, 52.26, 0.28 ), translation = ( -0.04274, 1.28792, 0.08479 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 76.54, 179.22, 76.96 ), translation = ( -0.00081, -0.61612, 0.99607 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 41.20, 179.63, 40.35 ), translation = ( 0.00224, -0.59432, -0.00061 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 176.73, 48.01, 3.73 ), translation = ( -0.03417, 1.30175, 0.54315 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 230.87, 36.36, 44.50 ), translation = ( -0.22116, 1.52177, 0.59395 )), Molecule(space_group = 'C 1 2 1', ensemble = barnase, rotation = ( 232.55, 34.96, 45.11 ), translation = ( -0.22841, 0.48240, 0.58824 )), Molecule(space_group = 'C 1 2 1', ensemble = barstar, rotation = ( 180.81, 51.69, 0.16 ), translation = ( -0.04034, 1.28861, 0.58031 ))) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ================================== Test 43: tstl_auto_glykos - python ================================== OK ================================== Test 44: tstl_auto_glykos - script ================================== OK ================================= Test 45: tst_mr_atom_pdb - python ================================= OK ================================= Test 46: tst_mr_atom_pdb - script ================================= None None FOBS SIGFOBS OK ==================================== Test 47: tst_anisotropy_iod - python ==================================== OK ==================================== Test 48: tst_anisotropy_iod - script ==================================== OK =============================== Test 49: tst_auto_toxd - python =============================== OK =============================== Test 50: tst_auto_toxd - script =============================== OK ============================== Test 51: tst_ftf_toxd - python ============================== OK ============================== Test 52: tst_ftf_toxd - script ============================== OK ======================================== Test 53: tst_auto_overlap_shift - python ======================================== OK ======================================== Test 54: tst_auto_overlap_shift - script ======================================== OK ============================== Test 55: tst_pak_toxd - python ============================== OK ============================== Test 56: tst_pak_toxd - script ============================== OK ===================================== Test 57: tst_auto_beta_prune - python ===================================== OK ===================================== Test 58: tst_auto_beta_prune - script ===================================== OK ================================= Test 59: tst_tncs_gideon - python ================================= {*}: List( [ Text(value = RFZ=3.8 TFZ=8.4 +TNCS PAK=2 LLG=84 LLG=87 PAK=2 LLG=87) ] ) != {#}: List( [ Text(value = RFZ=3.9 TFZ=8.2 +TNCS PAK=2 LLG=83 LLG=87 PAK=2 LLG=87) ] ) {*}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 274.08, 60.22, 61.19 ), translation = ( -0.60118, -0.49909, -0.39739 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 86.04, 121.90, 240.66 ), translation = ( -1.10730, 0.38030, -0.11490 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 93.88, 58.13, 60.76 ), translation = ( 0.60705, 0.38011, -0.38603 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 265.95, 119.73, 241.27 ), translation = ( 0.10070, -0.49898, -0.10173 ))) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ================================= Test 60: tst_tncs_gideon - script ================================= {*}: List( [ Text(value = RFZ=3.8 TFZ=8.4 +TNCS PAK=2 LLG=84 LLG=87 PAK=2 LLG=87) ] ) != {#}: List( [ Text(value = RFZ=3.9 TFZ=8.2 +TNCS PAK=2 LLG=83 LLG=87 PAK=2 LLG=87) ] ) {*}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 274.08, 60.22, 61.19 ), translation = ( -0.60118, -0.49909, -0.39739 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 86.04, 121.90, 240.66 ), translation = ( -1.10730, 0.38030, -0.11490 ))) ] ) != {#}: List( [ Solution(Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 93.88, 58.13, 60.76 ), translation = ( 0.60705, 0.38011, -0.38603 )), Molecule(space_group = 'P 21 21 21', ensemble = 2c1g_trim, rotation = ( 265.95, 119.73, 241.27 ), translation = ( 0.10070, -0.49898, -0.10173 ))) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results =========================== Test 61: tst_sceds - python =========================== OK =========================== Test 62: tst_sceds - script =========================== OK ============================================ Test 63: tst_mr_atom_fullsearch_pdb - python ============================================ OK ============================================ Test 64: tst_mr_atom_fullsearch_pdb - script ============================================ None None FOBS SIGFOBS OK ===================================== Test 65: tstb_ep_auto_trypse - python ===================================== OK ===================================== Test 66: tstb_ep_auto_trypse - script ===================================== OK ===================================== Test 67: tstb_ep_sav_ca_s_cl - python ===================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ===================================== Test 68: tstb_ep_sav_ca_s_cl - script ===================================== {*}: List( [ Text(value = S), Text(value = CA), Text(value = CL) ] ) != {#}: List( [ Text(value = S), Text(value = CL), Text(value = CA) ] ) {*}: List( [ ScatteringFactor(value = 0.56), ScatteringFactor(value = 1.29), ScatteringFactor(value = 0.70) ] ) != {#}: List( [ ScatteringFactor(value = 0.56), ScatteringFactor(value = 0.70), ScatteringFactor(value = 1.29) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ========================================= Test 69: tstl_auto_polyala_helix - python ========================================= OK ========================================= Test 70: tstl_auto_polyala_helix - script ========================================= OK ============================= Test 71: tst_mr_atom - python ============================= OK ============================= Test 72: tst_mr_atom - script ============================= None None FOBS SIGFOBS OK ================================= Test 73: tstb_ep_rusti_s - python ================================= Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ================================= Test 74: tstb_ep_rusti_s - script ================================= {*}: List( [ Text(value = CU), Text(value = S) ] ) != {#}: List( [ Text(value = S), Text(value = CU) ] ) {*}: List( [ ScatteringFactor(value = -9.09), ScatteringFactor(value = 0.29) ] ) != {#}: List( [ ScatteringFactor(value = 0.29), ScatteringFactor(value = -9.09) ] ) {*}: List( [ ScatteringFactor(value = 3.93), ScatteringFactor(value = 0.45) ] ) != {#}: List( [ ScatteringFactor(value = 0.45), ScatteringFactor(value = 3.93) ] ) {*}: Previous version: Phaser-2.8.3 (svn 8466) (commits: 7488, SHA-1: 7f1950481... , branch: master): ----------------------------------------------------------------------------------------------------- {#}: This version: Phaser-2.8.3 (commits: 7506, SHA-1: 7cf6076... , branch: master): ------------------------------------------------------------------------------------- ERROR: incorrect results ============================ Test 75: tstb_ep_p9 - python ============================ OK ============================ Test 76: tstb_ep_p9 - script ============================ OK ============================== Test 77: tst_btf_toxd - python ============================== OK ============================== Test 78: tst_btf_toxd - script ============================== OK ================================= Test 79: tst_prune_T0283 - python ================================= OK ================================= Test 80: tst_prune_T0283 - script ================================= OK ================================ Test 81: tstb_ep_apt_br - python ================================ OK ================================ Test 82: tstb_ep_apt_br - script ================================ OK ============================== Test 83: tst_ptf_toxd - python ============================== OK ============================== Test 84: tst_ptf_toxd - script ============================== OK ================================== Test 85: tst_auto_hibcacb - python ================================== OK ================================== Test 86: tst_auto_hibcacb - script ================================== OK ========================================== Test 87: tst_ep_atoms_partial_iod - python ========================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ========================================== Test 88: tst_ep_atoms_partial_iod - script ========================================== OK ================================== Test 89: tst_auto_overlap - python ================================== OK ================================== Test 90: tst_auto_overlap - script ================================== OK =================================== Test 91: tst_ptf_1bik_toxd - python =================================== OK =================================== Test 92: tst_ptf_1bik_toxd - script =================================== OK =============================== Test 93: tstb_ep_ybmbp - python =============================== OK =============================== Test 94: tstb_ep_ybmbp - script =============================== OK ==================================== Test 95: tst_gyre_beta_blip - python ==================================== OK ==================================== Test 96: tst_gyre_beta_blip - script ==================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_run_engine.py", line 188, in script report = input.evaluate( input = input, result = result, prefix = prefix ) File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_phaser_keyword.py", line 1459, in evaluate disable_tests_in = self.disable_tests_in, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_reporter.py", line 13, in create section = r( input = input, result = result, prefix = prefix ) File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_reporter.py", line 232, in gyre_rottra if len( s.findall( result.getDotRlist().unparse() ) ) > 0: AttributeError: 'ResultGYRE' object has no attribute 'getDotRlist' ERROR: 'ResultGYRE' object has no attribute 'getDotRlist' ================================ Test 97: tstb_ep_trypse - python ================================ Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ================================ Test 98: tstb_ep_trypse - script ================================ OK ==================================== Test 99: tst_ep_partial_iod - python ==================================== Full traceback: Traceback (most recent call last): File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 1048, in run_multiple_tests resfilesuffix = params.suffix File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 181, in run_test_and_compare resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_runner.py", line 116, in execute_test resfilesuffix = resfilesuffix, File "/home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_run_engine.py", line 68, in python_safe raise RuntimeError( "Error exit from process") RuntimeError: Error exit from process ERROR: Error exit from process ===================================== Test 100: tst_ep_partial_iod - script ===================================== OK SUMMARY of tests: 1: tstb_ep_rusti_cu_s - python - OK 2: tstb_ep_rusti_cu_s - script - OK 3: tst_anisotropy_beta_blip - python - OK 4: tst_anisotropy_beta_blip - script - OK 5: tst_rnp_toxd_cutout_mask - python - OK 6: tst_rnp_toxd_cutout_mask - script - OK 7: tstb_ep_ssadins - python - OK 8: tstb_ep_ssadins - script - OK 9: tstl_auto_beta_blip - python - OK 10: tstl_auto_beta_blip - script - OK 11: tst_prune_nagt - python - OK 12: tst_prune_nagt - script - OK 13: tst_ep_atoms_iod - python - OK 14: tst_ep_atoms_iod - script - OK 15: tst_frf_toxd - python - OK 16: tst_frf_toxd - script - OK 17: tst_ep_partial_ix_iod - python - ERROR (Error exit from process) 18: tst_ep_partial_ix_iod - script - OK 19: tstb_ep_sav_cl - python - ERROR (2 failures, 0 unknowns) 20: tstb_ep_sav_cl - script - ERROR (2 failures, 0 unknowns) 21: tst_rnp_toxd - python - OK 22: tst_rnp_toxd - script - OK 23: tst_btf_beta_blip - python - OK 24: tst_btf_beta_blip - script - OK 25: tst_brf_beta_blip - python - OK 26: tst_brf_beta_blip - script - OK 27: tstl_fast_beta_blip - python - OK 28: tstl_fast_beta_blip - script - OK 29: tst_anisotropy_toxd - python - OK 30: tst_anisotropy_toxd - script - OK 31: tstl_frf_iod - python - OK 32: tstl_frf_iod - script - OK 33: tst_auto_ed_toxd - python - OK 34: tst_auto_ed_toxd - script - OK 35: tst_brf_toxd - python - OK 36: tst_brf_toxd - script - OK 37: tst_rnp_no_bref_toxd - python - OK 38: tst_rnp_no_bref_toxd - script - OK 39: tst_llg_toxd - python - OK 40: tst_llg_toxd - script - OK 41: tst_rnp_barnase - python - ERROR (6 failures, 0 unknowns) 42: tst_rnp_barnase - script - ERROR (5 failures, 0 unknowns) 43: tstl_auto_glykos - python - OK 44: tstl_auto_glykos - script - OK 45: tst_mr_atom_pdb - python - OK 46: tst_mr_atom_pdb - script - OK 47: tst_anisotropy_iod - python - OK 48: tst_anisotropy_iod - script - OK 49: tst_auto_toxd - python - OK 50: tst_auto_toxd - script - OK 51: tst_ftf_toxd - python - OK 52: tst_ftf_toxd - script - OK 53: tst_auto_overlap_shift - python - OK 54: tst_auto_overlap_shift - script - OK 55: tst_pak_toxd - python - OK 56: tst_pak_toxd - script - OK 57: tst_auto_beta_prune - python - OK 58: tst_auto_beta_prune - script - OK 59: tst_tncs_gideon - python - ERROR (2 failures, 0 unknowns) 60: tst_tncs_gideon - script - ERROR (2 failures, 0 unknowns) 61: tst_sceds - python - OK 62: tst_sceds - script - OK 63: tst_mr_atom_fullsearch_pdb - python - OK 64: tst_mr_atom_fullsearch_pdb - script - OK 65: tstb_ep_auto_trypse - python - OK 66: tstb_ep_auto_trypse - script - OK 67: tstb_ep_sav_ca_s_cl - python - ERROR (Error exit from process) 68: tstb_ep_sav_ca_s_cl - script - ERROR (2 failures, 0 unknowns) 69: tstl_auto_polyala_helix - python - OK 70: tstl_auto_polyala_helix - script - OK 71: tst_mr_atom - python - OK 72: tst_mr_atom - script - OK 73: tstb_ep_rusti_s - python - ERROR (Error exit from process) 74: tstb_ep_rusti_s - script - ERROR (3 failures, 0 unknowns) 75: tstb_ep_p9 - python - OK 76: tstb_ep_p9 - script - OK 77: tst_btf_toxd - python - OK 78: tst_btf_toxd - script - OK 79: tst_prune_T0283 - python - OK 80: tst_prune_T0283 - script - OK 81: tstb_ep_apt_br - python - OK 82: tstb_ep_apt_br - script - OK 83: tst_ptf_toxd - python - OK 84: tst_ptf_toxd - script - OK 85: tst_auto_hibcacb - python - OK 86: tst_auto_hibcacb - script - OK 87: tst_ep_atoms_partial_iod - python - ERROR (Error exit from process) 88: tst_ep_atoms_partial_iod - script - OK 89: tst_auto_overlap - python - OK 90: tst_auto_overlap - script - OK 91: tst_ptf_1bik_toxd - python - OK 92: tst_ptf_1bik_toxd - script - OK 93: tstb_ep_ybmbp - python - OK 94: tstb_ep_ybmbp - script - OK 95: tst_gyre_beta_blip - python - OK 96: tst_gyre_beta_blip - script - ERROR ('ResultGYRE' object has no attribute 'getDotRlist') 97: tstb_ep_trypse - python - ERROR (Error exit from process) 98: tstb_ep_trypse - script - OK 99: tst_ep_partial_iod - python - ERROR (Error exit from process) 100: tst_ep_partial_iod - script - OK All tests status: ERROR ## Test suite all finished ## /home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser/phaser/__init__.py:5: FutureWarning: importing from boost.python is deprecated; this module will be removed shortly. import from boost_adaptbx.boost.python instead. Please see https://github.com/cctbx/cctbx_project/issues/458 for more information. import boost.python /home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_reporter.py:106: DeprecationWarning: invalid escape sequence \[ ensname = re.compile( "([^\[]*)" ) /home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_reporter.py:142: DeprecationWarning: invalid escape sequence \[ bracketed = re.compile( "(.*)\[\d+\]$" ) /home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_reporter.py:224: DeprecationWarning: invalid escape sequence \s """, re.MULTILINE | re.VERBOSE ) /home/phaserbuilder/PhaserNightlyBuildPy3/Current/modules/phaser_regression/test_reporter.py:289: DeprecationWarning: invalid escape sequence \s """, re.MULTILINE | re.DOTALL | re.VERBOSE ) None