Bootstrap build started on Sat Apr 20 00:00:01 2024
LANG=en_GB.UTF-8
SHELL=/bin/sh
LANGUAGE=en_GB:en
SHLVL=1
OLDPWD=/home/phaserbuilder
QT_QPA_PLATFORMTHEME=appmenu-qt5
XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop
PWD=/home/phaserbuilder/PhaserNightlyBuild
LOGNAME=phaserbuilder
HOME=/home/phaserbuilder
PATH=/usr/bin:/bin:/snap/bin
_=/usr/bin/python
Using compiler:

g++ (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
curl https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/phaser_regression/-/raw/master/MakeRegressionTestContents.py  > MakeRegressionTestContents.py
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  8384  100  8384    0     0  27310      0 --:--:-- --:--:-- --:--:-- 27398

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curl https://raw.githubusercontent.com/cctbx/cctbx_project/master/libtbx/auto_build/bootstrap.py > bootstrap.py
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  104k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  104k  100  104k    0     0   277k      0 --:--:-- --:--:-- --:--:--  277k

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"/usr/bin/python" bootstrap.py --builder=phaser base hot update --use_conda --verbose --python=27 --nproc=7
Current branch master is up to date.
From https://github.com/cctbx/cctbx_project
   47336b5..c22ee1b  master     -> origin/master
First, rewinding head to replay your work on top of it...
Fast-forwarded master to c22ee1beaafba14d7fbc01a143f151539476fe22.
Writing files containing version information for cctbx_project
===============================================================================
Wrote /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/../../cctbx_project/cctbx_version.txt
Wrote /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/../../cctbx_project/cctbx_version.h
Wrote /home/phaserbuilder/PhaserNightlyBuild/Current/modules/cctbx_project/libtbx/../../cctbx_project/setup.py
===============================================================================
Current branch master is up to date.
fatal: unable to access 'https://git.csx.cam.ac.uk/cimr-phaser/phaser_regression.git/': Could not resolve host: git.csx.cam.ac.uk
Performing actions: hot update base
Installing base packages using:
  /usr/bin/python modules/cctbx_project/libtbx/auto_build/install_conda.py --builder=phaser --install_conda --python=27
Existing non-git directory -- don't know what to do. skipping: scons
===== Running in modules/boost: git pull --rebase
===== Running in modules/cctbx_project: git pull --rebase
===== Running in modules/cctbx_project: /usr/bin/python libtbx/version.py
Existing non-git directory -- don't know what to do. skipping: ccp4io
Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx
Existing non-git directory -- don't know what to do. skipping: annlib
===== Running in modules/annlib_adaptbx: git pull --rebase
Existing non-git directory -- don't know what to do. skipping: eigen
Existing non-git directory -- don't know what to do. skipping: tntbx
===== Running in modules/phaser_regression: git pull --rebase
Process failed with return code 1

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"/usr/bin/python" bootstrap.py --builder=phaser build --use_conda --verbose --python=27 --nproc=7
Performing actions: build

  removing .pyc files in /home/phaserbuilder/PhaserNightlyBuild/Current/modules, walk? True
  removed 2 files
===== Running in build: run configure.py
Traceback (most recent call last):
  File "bootstrap.py", line 3081, in <module>
    run()
  File "bootstrap.py", line 3076, in run
    no_boost_src=options.no_boost_src,
  File "bootstrap.py", line 1277, in run
    i.run()
  File "bootstrap.py", line 193, in run
    raise RuntimeError("Could not run %s: File not found" % executable)
RuntimeError: Could not run conda_base/bin/python: File not found

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