Bootstrap build started on Sun Apr 30 04:00:07 2023
LANG=C.UTF-8
TERM=xterm-256color
SHELL=/bin/bash
NAME=Azimuth
SHLVL=2
OLDPWD=/mnt/c/Users/phaserbuilder/NightlyBuilds/PhaserWSL
WSL_DISTRO_NAME=Ubuntu-18.04
HOSTTYPE=x86_64
PWD=/mnt/c/Users/phaserbuilder/NightlyBuilds/PhaserWSL
LOGNAME=phaserbuilder
USER=phaserbuilder
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Utilities:/mnt/c/Program Files/TortoiseSVN/bin:/mnt/c/Program Files (x86)/NSIS/Unicode:/mnt/c/Program Files/Git/cmd:/mnt/c/Program Files/PuTTY/:/mnt/c/Program Files/TortoiseGit/bin:/mnt/c/Program Files/dotnet/:/mnt/c/Users/phaserbuilder/AppData/Local/Microsoft/WindowsApps
HOME=/home/phaserbuilder
WSLENV=
_=/usr/bin/python
Using compiler:

g++ (Ubuntu 7.3.0-16ubuntu3) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
curl https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/phaser_regression/-/raw/master/MakeRegressionTestContents.py  > MakeRegressionTestContents.py
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  8384  100  8384    0     0  36137      0 --:--:-- --:--:-- --:--:-- 36137

None
curl https://raw.githubusercontent.com/cctbx/cctbx_project/master/libtbx/auto_build/bootstrap.py > bootstrap.py
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  103k  100  103k    0     0  1366k      0 --:--:-- --:--:-- --:--:-- 1348k

None
"/usr/bin/python" bootstrap.py --builder=phaser --use_conda --verbose --python=27 --nproc=23
Already up to date.
Current branch master is up to date.
Auto packing the repository in background for optimum performance.
See "git help gc" for manual housekeeping.
Already up to date.
Current branch master is up to date.
Auto packing the repository in background for optimum performance.
See "git help gc" for manual housekeeping.
Writing files containing version information for cctbx_project
===============================================================================
Wrote /mnt/c/Users/phaserbuilder/NightlyBuilds/PhaserWSL/Current/modules/cctbx_project/libtbx/../../cctbx_project/cctbx_version.txt
Wrote /mnt/c/Users/phaserbuilder/NightlyBuilds/PhaserWSL/Current/modules/cctbx_project/libtbx/../../cctbx_project/cctbx_version.h
Wrote /mnt/c/Users/phaserbuilder/NightlyBuilds/PhaserWSL/Current/modules/cctbx_project/libtbx/../../cctbx_project/setup.py
===============================================================================
Already up to date.
Current branch master is up to date.
fatal: unable to access 'https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/phaser_regression.git/': server certificate verification failed. CAfile: /etc/ssl/certs/ca-certificates.crt CRLfile: none
Performing actions: hot update base build
Installing base packages using:
  /usr/bin/python modules/cctbx_project/libtbx/auto_build/install_conda.py --builder=phaser --install_conda --python=27
Existing non-git directory -- don't know what to do. skipping: scons
===== Running in modules/boost: git pull --rebase
===== Running in modules/cctbx_project: git pull --rebase
===== Running in modules/cctbx_project: /usr/bin/python libtbx/version.py
Existing non-git directory -- don't know what to do. skipping: ccp4io
Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx
Existing non-git directory -- don't know what to do. skipping: annlib
===== Running in modules/annlib_adaptbx: git pull --rebase
Existing non-git directory -- don't know what to do. skipping: eigen
Existing non-git directory -- don't know what to do. skipping: tntbx
===== Running in modules/phaser_regression: git pull --rebase
Process failed with return code 1

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