Bootstrap build started on Sun Apr 30 02:00:04 2023 TMP=C:\Users\phaserbuilder\AppData\Local\Temp COMPUTERNAME=AZIMUTH VS140COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\Tools\ USERDOMAIN=AZIMUTH DEFLOGDIR=C:\ProgramData\McAfee\Endpoint Security\Logs PSMODULEPATH=%ProgramFiles%\WindowsPowerShell\Modules;C:\WINDOWS\system32\WindowsPowerShell\v1.0\Modules COMMONPROGRAMFILES=C:\Program Files\Common Files PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 44 Stepping 2, GenuineIntel PROGRAMFILES=C:\Program Files PROCESSOR_REVISION=2c02 PATH=C:\Utilities\mingw-w64\x86_64-5.3.0-posix-seh-rt_v4-rev0\mingw64\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\WINDOWS\System32\OpenSSH\;C:\Utilities;C:\Program Files\TortoiseSVN\bin;C:\Program Files (x86)\NSIS\Unicode;C:\Program Files\Git\cmd;C:\Program Files\PuTTY\;C:\Program Files\TortoiseGit\bin;C:\Program Files\dotnet\;C:\Users\phaserbuilder\AppData\Local\Microsoft\WindowsApps SYSTEMROOT=C:\WINDOWS PROGRAMFILES(X86)=C:\Program Files (x86) DRIVERDATA=C:\Windows\System32\Drivers\DriverData GIT_SSH=C:\Windows\System32\OpenSSH\ssh.exe TEMP=C:\Users\phaserbuilder\AppData\Local\Temp COMMONPROGRAMFILES(X86)=C:\Program Files (x86)\Common Files PROCESSOR_ARCHITECTURE=AMD64 ALLUSERSPROFILE=C:\ProgramData LOCALAPPDATA=C:\Users\phaserbuilder\AppData\Local HOMEPATH=\Users\phaserbuilder USERDOMAIN_ROAMINGPROFILE=AZIMUTH PROGRAMW6432=C:\Program Files USERNAME=phaserbuilder LOGONSERVER=\\AZIMUTH PROMPT=$P$G COMSPEC=C:\WINDOWS\system32\cmd.exe PROGRAMDATA=C:\ProgramData ONEDRIVE=C:\Users\phaserbuilder\OneDrive PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC;.PY;.PYW WINDIR=C:\WINDOWS APPDATA=C:\Users\phaserbuilder\AppData\Roaming HOMEDRIVE=C: SYSTEMDRIVE=C: NUMBER_OF_PROCESSORS=24 PROCESSOR_LEVEL=6 COMMONPROGRAMW6432=C:\Program Files\Common Files OS=Windows_NT PUBLIC=C:\Users\Public USERPROFILE=C:\Users\phaserbuilder Using compiler: g++ (x86_64-posix-seh-rev0, Built by MinGW-W64 project) 5.3.0 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. curl https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/phaser_regression/-/raw/master/MakeRegressionTestContents.py > MakeRegressionTestContents.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 8384 100 8384 0 0 42805 0 --:--:-- --:--:-- --:--:-- 43440 None curl https://raw.githubusercontent.com/cctbx/cctbx_project/master/libtbx/auto_build/bootstrap.py > bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 103k 100 103k 0 0 411k 0 --:--:-- --:--:-- --:--:-- 415k None "C:\Python27amd64\python.exe" bootstrap.py --builder=phaser --use_conda --verbose --python=27 --nproc=23 C:\Users\phaserbuilder\NightlyBuilds\PhaserMinGW\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhaserMinGW\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) C:\Users\phaserbuilder\NightlyBuilds\PhaserMinGW\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. From https://github.com/cctbx/cctbx_project f23cf6e114..df5b512ab8 master -> origin/master Updating f23cf6e114..df5b512ab8 Fast-forward mmtbx/solvent/ordered_solvent.py | 4 ++++ xfel/command_line/drift.py | 1 + xfel/util/drift.py | 1 + xfel/util/weather.py | 2 +- 4 files changed, 7 insertions(+), 1 deletion(-) Writing files containing version information for cctbx_project =============================================================================== Wrote C:\Users\phaserbuilder\NightlyBuilds\PhaserMinGW\Current\modules\cctbx_project\libtbx\..\..\cctbx_project\cctbx_version.txt Wrote C:\Users\phaserbuilder\NightlyBuilds\PhaserMinGW\Current\modules\cctbx_project\libtbx\..\..\cctbx_project\cctbx_version.h Wrote C:\Users\phaserbuilder\NightlyBuilds\PhaserMinGW\Current\modules\cctbx_project\libtbx\..\..\cctbx_project\setup.py =============================================================================== Already up to date. Already up to date. error: cannot pull with rebase: Your index contains uncommitted changes. error: please commit or stash them. Performing actions: hot update base build Installing base packages using: C:\Python27amd64\python.exe modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phaser --install_conda --python=27 ===== Running in .: deleting dist, tests, tmp Existing non-git directory -- don't know what to do. skipping: scons Existing non-git directory -- don't know what to do. skipping: annlib ===== Running in modules\cctbx_project: git pull --rebase ===== Running in modules\cctbx_project: C:\Python27amd64\python.exe libtbx\version.py Existing non-git directory -- don't know what to do. skipping: eigen ===== Running in modules\annlib_adaptbx: git pull --rebase ===== Running in modules\reduce: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io Existing non-git directory -- don't know what to do. skipping: tntbx ===== Running in modules\phaser: git pull --rebase Process failed with return code 128 None