"C:\Program Files\Python38\python.exe" bootstrap.py --builder=voyager --use_conda --verbose --python=38 --nproc=23 tests 

C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current>((ROBOCOPY empty dist /MIR /COPYALL  1>nul )  & rmdir /S /Q dist\   & ) 
The system cannot find the file specified.

C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current>((ROBOCOPY empty tests /MIR /COPYALL  1>nul )  & rmdir /S /Q tests\   & ) 
The system cannot find the file specified.

C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current>((ROBOCOPY empty tmp /MIR /COPYALL  1>nul )  & rmdir /S /Q tmp\   & ) 
The system cannot find the file specified.
Running 6 tests on 6 processors:
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\Q9H790\tst_casp_rel_ellg_Q9H790.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1024-D1\tst_casp_rel_ellg_1024.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\R1030-D2\tst_casp_rel_ellg_1030.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1038-D2\tst_casp_rel_ellg_1038.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\em_placement\tst_emplace_local.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\em_placement\tst_em_placement.py"

libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1038-D2\tst_casp_rel_ellg_1038.py" [FAIL] 11.6s
  Time: 11.64
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1038-D2\tst_casp_rel_ellg_1038.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1038-D2\tst_casp_rel_ellg_1038.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\Q9H790\tst_casp_rel_ellg_Q9H790.py" [FAIL] 11.7s
  Time: 11.66
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\Q9H790\tst_casp_rel_ellg_Q9H790.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\Q9H790\tst_casp_rel_ellg_Q9H790.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\R1030-D2\tst_casp_rel_ellg_1030.py" [FAIL] 11.7s
  Time: 11.66
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\R1030-D2\tst_casp_rel_ellg_1030.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\R1030-D2\tst_casp_rel_ellg_1030.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1024-D1\tst_casp_rel_ellg_1024.py" [FAIL] 11.7s
  Time: 11.67
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1024-D1\tst_casp_rel_ellg_1024.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1024-D1\tst_casp_rel_ellg_1024.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\em_placement\tst_emplace_local.py" [OK] 61.1s
  Standard error:
    C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current\conda_base\lib\site-packages\future\standard_library\__init__.py:65: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
      import imp
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\em_placement\tst_em_placement.py" [OK] 239.0s
  Standard error:
    C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current\conda_base\lib\site-packages\future\standard_library\__init__.py:65: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
      import imp
================================================================================

Tests finished. Elapsed time: 239.62s

Distribution of test runtimes:
  11.6s - 34.4s: 4
  34.4s - 57.1s: 0
  57.1s - 79.9s: 1
  79.9s - 102.6s: 0
  102.6s - 125.3s: 0
  125.3s - 148.1s: 0
  148.1s - 170.8s: 0
  170.8s - 193.5s: 0
  193.5s - 216.3s: 0
  216.3s - 239.0s: 1


Warning: the following jobs took at least 180 seconds:
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\em_placement\tst_em_placement.py": 239.0s
Please try to reduce overall runtime - consider splitting up these tests.


Error: the following jobs returned non-zero exit codes or suspicious stderr output:

libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1038-D2\tst_casp_rel_ellg_1038.py" [FAIL] 11.6s
  Time: 11.64
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1038-D2\tst_casp_rel_ellg_1038.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1038-D2\tst_casp_rel_ellg_1038.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\Q9H790\tst_casp_rel_ellg_Q9H790.py" [FAIL] 11.7s
  Time: 11.66
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\Q9H790\tst_casp_rel_ellg_Q9H790.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\Q9H790\tst_casp_rel_ellg_Q9H790.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\R1030-D2\tst_casp_rel_ellg_1030.py" [FAIL] 11.7s
  Time: 11.66
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\R1030-D2\tst_casp_rel_ellg_1030.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\R1030-D2\tst_casp_rel_ellg_1030.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1024-D1\tst_casp_rel_ellg_1024.py" [FAIL] 11.7s
  Time: 11.67
  Return code: 1
  OKs: 0
  Standard error:
    Traceback (most recent call last):
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1024-D1\tst_casp_rel_ellg_1024.py", line 89, in <module>
        exercise()
      File "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\voyager_regression\CASP_Rel_eLLG\T1024-D1\tst_casp_rel_ellg_1024.py", line 56, in exercise
        assert os.path.exists(csvpath)
    AssertionError

Please verify these tests manually.

Summary:
  Tests run                    : 6
  Failures                     : 4
  Warnings (possible failures) : 0
  Known Failures (  0)         : 0
  Known Unstable (  0)         : 0
  Stderr output (discouraged)  : 6

See run_tests_parallel_zlog for full output.


********************************************************************************
ERROR: 4 TEST FAILURES.  PLEASE FIX BEFORE COMMITTING CODE.
********************************************************************************

Running 13 tests on 13 processors:
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\ensembler\tst_ensembler.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\ensembler_new\tst_ensembler_new.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\extract_alignments\tst_extract_alignment.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\find_alt_orig_sym_mate\test_find_alt_orig_sym_mate.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\mr_model_preparation\tst_mr_model_preparation.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\MRage\tst_MRage.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\nma_perturb\tst_nma_perturb.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sceds\tst_sceds.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\proq2_pdb_to_sculptor_error_file\tst_proq2_pdb_to_sculptor_error.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sculpt_ensembler\tst_sculpt_ensemble.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sculptor\tst_sculptor.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sculptor_new\tst_sculptor_new.py"
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\phenix_interface\test_phenix_interface.py"

libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\extract_alignments\tst_extract_alignment.py" [OK] 3.9s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\ensembler\tst_ensembler.py" [OK] 4.4s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\proq2_pdb_to_sculptor_error_file\tst_proq2_pdb_to_sculptor_error.py" [OK] 4.5s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\ensembler_new\tst_ensembler_new.py" [OK] 4.9s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sculptor\tst_sculptor.py" [OK] 4.8s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sculptor_new\tst_sculptor_new.py" [OK] 5.5s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\mr_model_preparation\tst_mr_model_preparation.py" [OK] 5.9s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\nma_perturb\tst_nma_perturb.py" [OK] 7.5s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sceds\tst_sceds.py" [OK] 8.5s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\sculpt_ensembler\tst_sculpt_ensemble.py" [OK] 8.6s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\phenix_interface\test_phenix_interface.py" [OK] 139.3s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\MRage\tst_MRage.py" [OK] 159.8s
libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\find_alt_orig_sym_mate\test_find_alt_orig_sym_mate.py" [OK] 227.9s
================================================================================

Tests finished. Elapsed time: 228.53s

Distribution of test runtimes:
  3.9s - 26.3s: 10
  26.3s - 48.7s: 0
  48.7s - 71.1s: 0
  71.1s - 93.5s: 0
  93.5s - 115.9s: 0
  115.9s - 138.3s: 0
  138.3s - 160.7s: 2
  160.7s - 183.1s: 0
  183.1s - 205.5s: 0
  205.5s - 227.9s: 1


Warning: the following jobs took at least 180 seconds:
  libtbx.python "c:\users\phaserbuilder\nightlybuilds\phasertngvc2015\current\modules\phaser_regression\additional_regressions\find_alt_orig_sym_mate\test_find_alt_orig_sym_mate.py": 227.9s
Please try to reduce overall runtime - consider splitting up these tests.

Summary:
  Tests run                    : 13
  Failures                     : 0
  Warnings (possible failures) : 0
  Known Failures (  0)         : 0
  Known Unstable (  0)         : 0
  Stderr output (discouraged)  : 0

See run_tests_parallel_zlog for full output.

Performing actions: tests
===== Running in .: deleting dist, tests, tmp

  removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\PhaserTNGVC2015\Current\modules, walk? True
  removed 159 files
===== Running in tests\voyager_regression: test voyager_regression
===== Running in tests\phaser_regression: test phaser_regression

Bootstrap success: tests

None