13/05/2019 9:01:34.16 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) Python: 2.7.15 "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\python.exe" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: True Boost threads enabled: True Enable CUDA: False Use conda: False Use opt_resources if available: False Use environment flags: False Enable C++11: False Python3 migration warning policy: None command_version_suffix: None Relocatable paths anchored at: c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build Top-down list of all modules involved: iota "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iota" xia2 "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\xia2" dials "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dials" xfel "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel" prime "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\prime" simtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\simtbx" cma_es "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cma_es" amber_adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\amber_adaptbx" labelit "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\labelit" rstbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\rstbx" spotfinder "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\spotfinder" annlib+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\annlib" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\annlib_adaptbx" phenix_examples "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_examples" phenix "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix" reel "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reel" phaser "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser" phaser_regression "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser_regression" tntbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\tntbx" solve_resolve "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\solve_resolve" muscle "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\muscle" ksdssp "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ksdssp" pulchra "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\pulchra" phenix_html "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_html" phenix_regression "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_regression" elbow "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\elbow" Plex "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\Plex" PyQuante "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\PyQuante" crys3d "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\crys3d" chem_data "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\chem_data" wxtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\wxtbx" gltbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\gltbx" mmtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\mmtbx" suitename "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\suitename" king "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\king" probe "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\probe" reduce "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reduce" dxtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dxtbx" iotbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iotbx" ccp4io+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ccp4io" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ccp4io_adaptbx" smtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\smtbx" ucif "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\ucif" cbflib+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cbflib" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx" cctbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx" scitbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\scitbx" fable "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\fable" omptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\omptbx" boost+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\boost" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\boost_adaptbx" tbxx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\tbxx" chiltbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\chiltbx" libtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\libtbx" Creating files in build directory: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build" dispatcher_include_template.bat setpaths.bat setpaths_all.bat setpaths_debug.bat unsetpaths.bat SConstruct Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\libtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\boost_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\fable\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\scitbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\smtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iotbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dxtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reduce\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\probe\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\king\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\suitename\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\mmtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\gltbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\wxtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\crys3d\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\elbow\elbow\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_regression\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_html\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ksdssp\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\muscle\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\solve_resolve\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser_regression\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser\phaser\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reel\reel\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix\phenix\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\spotfinder\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\rstbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\labelit\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\amber_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\simtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\prime\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\ui\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\cxi\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\clustering\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\merging\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\small_cell\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dials\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\xia2\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iota\command_line" requires mock>=2.0, has 2.0.0 requires pytest<5.0,>=3.1,>=3.6, has 4.5.0 requirement blosc>=1.8 is not currently met, current version 1.7.0 attempting update of blosc>=1.8... Collecting blosc>=1.8 Using cached https://files.pythonhosted.org/packages/6d/3b/2b707cd330a205ba5c69b5e8bfa9c05691442e45ce9ce882c4c8d343e61a/blosc-1.8.1.tar.gz Installing collected packages: blosc Found existing installation: blosc 1.7.0 Uninstalling blosc-1.7.0: Successfully uninstalled blosc-1.7.0 Running setup.py install for blosc: started Running setup.py install for blosc: finished with status 'error' Complete output from command C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\phaserbuilder\\appdata\\local\\temp\\pip-install-bcsehr\\blosc\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\phaserbuilder\appdata\local\temp\pip-record-zngfsu\install-record.txt --single-version-externally-managed --compile: SSE2 detected running install running build running build_py creating build creating build\lib.win-amd64-2.7 creating build\lib.win-amd64-2.7\blosc copying blosc\test.py -> build\lib.win-amd64-2.7\blosc copying blosc\toplevel.py -> build\lib.win-amd64-2.7\blosc copying blosc\version.py -> build\lib.win-amd64-2.7\blosc copying blosc\__init__.py -> build\lib.win-amd64-2.7\blosc running build_clib building 'lz4' library error: Microsoft Visual C++ 9.0 is required. Get it from http://aka.ms/vcpython27 ---------------------------------------- Rolling back uninstall of blosc Command "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\phaserbuilder\\appdata\\local\\temp\\pip-install-bcsehr\\blosc\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\phaserbuilder\appdata\local\temp\pip-record-zngfsu\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in c:\users\phaserbuilder\appdata\local\temp\pip-install-bcsehr\blosc\ You are using pip version 10.0.1, however version 19.1.1 is available. You should consider upgrading via the 'python -m pip install --upgrade pip' command. update failed. please check manually requires dials-data>=1.0, has 1.0.22 requires Jinja2, has 2.10 requires msgpack, has 0.6.1 requires orderedset, has 2.0.1 requires procrunner>=1.0.0, has 1.0.1 requires scikit_learn[alldeps]<0.21, has 0.19.1 requires scipy, has 1.0.1 requires tqdm==4.23.4, has 4.23.4 requires networkx, has 2.2 requires tabulate, has 0.8.2 Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\boost_adaptbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\scitbx\libtbx_refresh.py" Generating C++ header files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\scitbx\array_family" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\scitbx\array_family\boost_python" Using fable to convert scitbx\lbfgs.f Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\cctbx\eltbx" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\cctbx\boost_python" ********************************************************************************************************************************************* Warning: unexpected md5 hexdigest: File: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\sgtbx\direct_space_asu\reference_table.py" New md5 hexdigest: 68190fbc3b2ed5d0406c642b96c61734 Files to review: sgtbx/direct_space_asu/reference_table.py cctbx/libtbx_refresh.py ********************************************************************************************************************************************* ********************************************************************************************************************************************************** Warning: unexpected md5 hexdigest: File: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\sgtbx\direct_space_asu\proto\generate_cpp_asu_table.py" New md5 hexdigest: 47cb5c72876089105d614fd8473a36d2 Files to review: sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py cctbx/libtbx_refresh.py ********************************************************************************************************************************************************** Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\libtbx_refresh.py" Copying to lib: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cbflib\pycbf\pycbf.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\smtbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\smtbx\boost_python" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iotbx\libtbx_refresh.py" Using fable to convert iotbx\pdb\hybrid_36_f.f Writing: iotbx\pdb\hybrid_36_fem.cpp Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reduce\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\probe\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\mmtbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\gltbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\gltbx" Info: Re-using existing font cpp files. Hint: Remove gltbx\FONTS_UCS_DONE_FLAG_FILE to force generation of new font files. Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\crys3d\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_regression\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\solve_resolve\libtbx_refresh.py" Number of hpp files generated from resolve cpp files: 721 Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\annlib_adaptbx\libtbx_refresh.py" Generating C++ files for self-inclusive approximate nearest neighbour Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dials\libtbx_refresh.py" Updating entry points for dials 3 entries for entry point dxtbx.scaling_model_ext 1 entries for entry point dxtbx.profile_model DIALS 2.dev.323-gfdc06f206 Identified autocompletable commands: dials.analyse_background dials.calc_rmsds dials.combine_found_spots dials.find_spots dials.geometry_viewer dials.index dials.integrate dials.reciprocal_lattice_viewer dials.refine dials.reindex dials.rl_png Installing autocompletion script into: Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\xia2\libtbx_refresh.py" XIA2 0.6.100-gc7fb7706 Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\exe_dev" This script is only applicable to Linux - exiting. Done. scons: Reading SConscript files ... scons: warning: VC version 9.0 not installed. C/C++ compilers are most likely not set correctly. Installed versions are: ['14.1', '14.0'] File "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\cctbx_project\libtbx\SConscript", line 330, in scons: warning: VC version 9.0 not installed. C/C++ compilers are most likely not set correctly. Installed versions are: ['14.1', '14.0'] File "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\cctbx_project\libtbx\SConscript", line 330, in MSVC_VERSION: 9.0 libtbx.scons: OpenMP is available. BOOST_VERSION: 106300 libtbx.scons: implicit dependency scan disabled for directory c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\boost phaser: Distributed version phaser: Generating C++ and libtbx.phil defaults files phaser: Building shared version scons: done reading SConscript files. scons: Building targets ... link /nologo /incremental:no /dll /MANIFEST /out:lib\boost_numpy.dll /implib:lib\boost_numpy.lib /LIBPATH:lib /LIBPATH:C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\lib /LIBPATH:C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\cctbx_project\lib /LIBPATH:C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\libs python27.lib boost_python.lib boost\libs\python\src\numpy\dtype.obj boost\libs\python\src\numpy\matrix.obj boost\libs\python\src\numpy\ndarray.obj boost\libs\python\src\numpy\numpy.obj boost\libs\python\src\numpy\scalars.obj boost\libs\python\src\numpy\ufunc.obj scons: done building targets. usr+sys time: 62.72 seconds wall clock time: 4 minutes 37.28 seconds (277.28 seconds total) scons: Reading SConscript files ... scons: warning: VC version 9.0 not installed. C/C++ compilers are most likely not set correctly. Installed versions are: ['14.1', '14.0'] File "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\cctbx_project\libtbx\SConscript", line 330, in scons: warning: VC version 9.0 not installed. C/C++ compilers are most likely not set correctly. Installed versions are: ['14.1', '14.0'] File "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\cctbx_project\libtbx\SConscript", line 330, in MSVC_VERSION: 9.0 libtbx.scons: OpenMP is available. BOOST_VERSION: 106300 libtbx.scons: implicit dependency scan disabled for directory c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\boost phaser: Distributed version phaser: Generating C++ and libtbx.phil defaults files phaser: Building shared version scons: done reading SConscript files. scons: Building targets ... link /nologo /incremental:no /dll /MANIFEST /out:lib\boost_numpy.dll /implib:lib\boost_numpy.lib /LIBPATH:lib /LIBPATH:C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\lib /LIBPATH:C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\cctbx_project\lib /LIBPATH:C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\libs python27.lib boost_python.lib boost\libs\python\src\numpy\dtype.obj boost\libs\python\src\numpy\matrix.obj boost\libs\python\src\numpy\ndarray.obj boost\libs\python\src\numpy\numpy.obj boost\libs\python\src\numpy\scalars.obj boost\libs\python\src\numpy\ufunc.obj scons: done building targets. usr+sys time: 56.53 seconds wall clock time: 67.03 seconds Processing data files in "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\chem_data\rotarama_data": rota8000-cys.data -> rota8000-cys.pickle: already up to date. rota8000-asp.data -> rota8000-asp.pickle: already up to date. rota8000-ser.data -> rota8000-ser.pickle: already up to date. rota8000-gln.data -> rota8000-gln.pickle: already up to date. rota8000-ile.data -> rota8000-ile.pickle: already up to date. rota8000-pro.data -> rota8000-pro.pickle: already up to date. rota8000-lys.data -> rota8000-lys.pickle: already up to date. rota8000-thr.data -> rota8000-thr.pickle: already up to date. rota8000-phetyr.data -> rota8000-phetyr.pickle: already up to date. rota8000-glu.data -> rota8000-glu.pickle: already up to date. rota8000-met.data -> rota8000-met.pickle: already up to date. rota8000-his.data -> rota8000-his.pickle: already up to date. rota8000-leu.data -> rota8000-leu.pickle: already up to date. rota8000-arg.data -> rota8000-arg.pickle: already up to date. rota8000-trp.data -> rota8000-trp.pickle: already up to date. rota8000-asn.data -> rota8000-asn.pickle: already up to date. rota8000-phetyr.data -> rota8000-phetyr.pickle: already up to date. rota8000-val.data -> rota8000-val.pickle: already up to date. Processing data files in "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\chem_data\rotarama_data": rama8000-ileval-nopreP.data -> rama8000-ileval-nopreP.pickle: already up to date. rama8000-gly-sym.data -> rama8000-gly-sym.pickle: already up to date. rama8000-cispro.data -> rama8000-cispro.pickle: already up to date. rama8000-general-noGPIVpreP.data -> rama8000-general-noGPIVpreP.pickle: already up to date. rama8000-transpro.data -> rama8000-transpro.pickle: already up to date. rama8000-prepro-noGP.data -> rama8000-prepro-noGP.pickle: already up to date. u+s,u,s: 1.75 0.67 1.08 Wrote C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\build\dispatcher_include_phenix.bat You should now run libtbx.refresh to regenerate dispatchers. Python: 2.7.15 "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\python.exe" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: True Boost threads enabled: True Enable CUDA: False Use conda: False Use opt_resources if available: False Use environment flags: False Enable C++11: False Python3 migration warning policy: None command_version_suffix: None Relocatable paths anchored at: c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build Top-down list of all modules involved: iota "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iota" xia2 "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\xia2" dials "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dials" xfel "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel" prime "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\prime" simtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\simtbx" cma_es "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cma_es" amber_adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\amber_adaptbx" labelit "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\labelit" rstbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\rstbx" spotfinder "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\spotfinder" annlib+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\annlib" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\annlib_adaptbx" phenix_examples "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_examples" phenix "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix" reel "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reel" phaser "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser" phaser_regression "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser_regression" tntbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\tntbx" solve_resolve "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\solve_resolve" muscle "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\muscle" ksdssp "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ksdssp" pulchra "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\pulchra" phenix_html "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_html" phenix_regression "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_regression" elbow "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\elbow" Plex "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\Plex" PyQuante "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\PyQuante" crys3d "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\crys3d" chem_data "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\chem_data" wxtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\wxtbx" gltbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\gltbx" mmtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\mmtbx" suitename "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\suitename" king "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\king" probe "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\probe" reduce "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reduce" dxtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dxtbx" iotbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iotbx" ccp4io+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ccp4io" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ccp4io_adaptbx" smtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\smtbx" ucif "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\ucif" cbflib+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cbflib" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx" cctbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx" scitbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\scitbx" fable "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\fable" omptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\omptbx" boost+adaptbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\boost" "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\boost_adaptbx" tbxx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\tbxx" chiltbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\chiltbx" libtbx "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\libtbx" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\dispatcher_include_phenix.bat" Creating files in build directory: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build" dispatcher_include_template.bat setpaths.bat setpaths_all.bat setpaths_debug.bat unsetpaths.bat SConstruct Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\libtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\boost_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\fable\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\scitbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\smtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iotbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dxtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reduce\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\probe\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\king\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\suitename\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\mmtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\gltbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\wxtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\crys3d\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\elbow\elbow\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_regression\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_html\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\ksdssp\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\muscle\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\solve_resolve\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser_regression\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phaser\phaser\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reel\reel\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix\phenix\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\spotfinder\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\rstbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\labelit\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\amber_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\simtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\prime\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\ui\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\cxi\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\clustering\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\merging\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\small_cell\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dials\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\xia2\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iota\command_line" requires mock>=2.0, has 2.0.0 requires pytest<5.0,>=3.1,>=3.6, has 4.5.0 requirement blosc>=1.8 is not currently met, current version 1.7.0 attempting update of blosc>=1.8... Collecting blosc>=1.8 Using cached https://files.pythonhosted.org/packages/6d/3b/2b707cd330a205ba5c69b5e8bfa9c05691442e45ce9ce882c4c8d343e61a/blosc-1.8.1.tar.gz Installing collected packages: blosc Found existing installation: blosc 1.7.0 Uninstalling blosc-1.7.0: Successfully uninstalled blosc-1.7.0 Running setup.py install for blosc: started Running setup.py install for blosc: finished with status 'error' Complete output from command C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\phaserbuilder\\appdata\\local\\temp\\pip-install-_9c7oo\\blosc\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\phaserbuilder\appdata\local\temp\pip-record-6hy7vd\install-record.txt --single-version-externally-managed --compile: SSE2 detected running install running build running build_py creating build creating build\lib.win-amd64-2.7 creating build\lib.win-amd64-2.7\blosc copying blosc\test.py -> build\lib.win-amd64-2.7\blosc copying blosc\toplevel.py -> build\lib.win-amd64-2.7\blosc copying blosc\version.py -> build\lib.win-amd64-2.7\blosc copying blosc\__init__.py -> build\lib.win-amd64-2.7\blosc running build_clib building 'lz4' library error: Microsoft Visual C++ 9.0 is required. Get it from http://aka.ms/vcpython27 ---------------------------------------- Rolling back uninstall of blosc Command "C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\base\bin\python\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\phaserbuilder\\appdata\\local\\temp\\pip-install-_9c7oo\\blosc\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\phaserbuilder\appdata\local\temp\pip-record-6hy7vd\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in c:\users\phaserbuilder\appdata\local\temp\pip-install-_9c7oo\blosc\ You are using pip version 10.0.1, however version 19.1.1 is available. You should consider upgrading via the 'python -m pip install --upgrade pip' command. update failed. please check manually requires dials-data>=1.0, has 1.0.22 requires Jinja2, has 2.10 requires msgpack, has 0.6.1 requires orderedset, has 2.0.1 requires procrunner>=1.0.0, has 1.0.1 requires scikit_learn[alldeps]<0.21, has 0.19.1 requires scipy, has 1.0.1 requires tqdm==4.23.4, has 4.23.4 requires networkx, has 2.2 requires tabulate, has 0.8.2 Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\boost_adaptbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\scitbx\libtbx_refresh.py" Generating C++ header files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\scitbx\array_family" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\scitbx\array_family\boost_python" Using fable to convert scitbx\lbfgs.f Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\cctbx\eltbx" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\cctbx\boost_python" ********************************************************************************************************************************************* Warning: unexpected md5 hexdigest: File: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\sgtbx\direct_space_asu\reference_table.py" New md5 hexdigest: 68190fbc3b2ed5d0406c642b96c61734 Files to review: sgtbx/direct_space_asu/reference_table.py cctbx/libtbx_refresh.py ********************************************************************************************************************************************* ********************************************************************************************************************************************************** Warning: unexpected md5 hexdigest: File: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cctbx\sgtbx\direct_space_asu\proto\generate_cpp_asu_table.py" New md5 hexdigest: 47cb5c72876089105d614fd8473a36d2 Files to review: sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py cctbx/libtbx_refresh.py ********************************************************************************************************************************************************** Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\libtbx_refresh.py" Copying to lib: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cbflib\pycbf\pycbf.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\smtbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\include\smtbx\boost_python" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\iotbx\libtbx_refresh.py" Using fable to convert iotbx\pdb\hybrid_36_f.f Writing: iotbx\pdb\hybrid_36_fem.cpp Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\reduce\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\probe\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\mmtbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\gltbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\gltbx" Info: Re-using existing font cpp files. Hint: Remove gltbx\FONTS_UCS_DONE_FLAG_FILE to force generation of new font files. Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\crys3d\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix_regression\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\solve_resolve\libtbx_refresh.py" Number of hpp files generated from resolve cpp files: 721 Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\phenix\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\annlib_adaptbx\libtbx_refresh.py" Generating C++ files for self-inclusive approximate nearest neighbour Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\cctbx_project\xfel\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\dials\libtbx_refresh.py" Updating entry points for dials 3 entries for entry point dxtbx.scaling_model_ext 1 entries for entry point dxtbx.profile_model DIALS 2.dev.323-gfdc06f206 Identified autocompletable commands: dials.analyse_background dials.calc_rmsds dials.combine_found_spots dials.find_spots dials.geometry_viewer dials.index dials.integrate dials.reciprocal_lattice_viewer dials.refine dials.reindex dials.rl_png Installing autocompletion script into: Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\modules\xia2\libtbx_refresh.py" XIA2 0.6.100-gc7fb7706 Processing: "c:\users\phaserbuilder\nightlybuilds\phenixvc2008\x64\current\build\exe_dev" This script is only applicable to Linux - exiting. Done. Performing actions: build ===== Running in .: deleting dist, tests, tmp removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules, walk? True removed 1325 files ===== Running in build: run configure.py ===== Running in build: save configure command ===== Running in build: libtbx.scons.bat ===== Running in build: libtbx.scons.bat ===== Running in build: rebuild rotarama ===== Running in build: gui dispatcher ===== Running in .: libtbx.refresh Bootstrap success: build 13/05/2019 9:10:25.47