16/11/2019 12:00:24.03 16/11/2019 12:00:24.35 C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Downloading http://cci.lbl.gov/repositories/annlib.gz: 0.5 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from annlib.gz ===== Downloading http://cci.lbl.gov/repositories/scons.gz: 0.6 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from scons.gz ===== Downloading http://cci.lbl.gov/repositories/ccp4io.gz: 1.4 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from ccp4io.gz ===== Downloading http://cci.lbl.gov/repositories/eigen.gz: 1.5 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from eigen.gz ===== Downloading http://cci.lbl.gov/repositories/clipper.gz: 0.6 MB [0%.........20%.........40%.........60%.........80%.........100%] Already up to date. Current branch master is up to date. From https://github.com/cctbx/cctbx_project 8f85ae70e..7c2dd1b6b master -> origin/master b2bb53a19..b1e583eeb diffBragg -> origin/diffBragg + f7bf7facf...7a2616434 newpy -> origin/newpy (forced update) Updating 8f85ae70e..7c2dd1b6b Fast-forward .azure-pipelines/azure-pipelines-nightly.yml | 2 +- crys3d/hklview/NGL_HKLviewerGui.py | 65 ++++++++++++---------- crys3d/hklview/cmdlineframes.py | 1 + crys3d/hklview/jsview_3d.py | 21 ++++++- iota/__init__.py | 4 +- iota/components/iota_base.py | 8 +-- iota/components/iota_threads.py | 3 +- iota/components/iota_ui_frames.py | 29 ++++------ iota/doc/NOTES.txt | 5 +- spotfinder/applications/wrappers.py | 4 +- spotfinder/dxtbx_toolbox/practical_heuristics.py | 4 +- xfel/cftbx/detector/cspad_cbf_tbx.py | 4 +- xfel/command_line/cbf_average.py | 4 +- xfel/command_line/cspad_cbf_metrology.py | 5 +- xfel/command_line/cspad_detector_congruence.py | 6 +- xfel/command_line/cspad_detector_congruence2.py | 6 +- xfel/command_line/cspad_detector_shifts.py | 6 +- xfel/command_line/cspad_detector_statistics.py | 6 +- xfel/command_line/cxi_display_metrology.py | 4 +- xfel/command_line/detector_residuals.py | 6 +- xfel/command_line/experiment_json_to_cbf_def.py | 6 +- xfel/command_line/filter_experiments_by_rmsd.py | 10 +--- xfel/command_line/find_highres_shots.py | 6 +- xfel/command_line/frame_unpickler.py | 3 +- xfel/command_line/make_dials_mask.py | 4 +- xfel/command_line/make_mask.py | 4 +- xfel/command_line/recompute_mosaicity.py | 10 +--- xfel/command_line/striping.py | 7 +-- xfel/command_line/xfel_process.py | 6 +- xfel/command_line/xtc_dump.py | 19 ++++--- xfel/command_line/xtc_process.py | 32 +++++------ xfel/cxi/cspad_ana/mod_mar.py | 6 +- xfel/merging/application/worker.py | 3 +- xfel/sacla/mpccd_geom2json.py | 4 +- xfel/small_cell/command_line/small_cell_process.py | 8 +-- .../command_line/xfel_small_cell_process.py | 6 +- xfel/small_cell/small_cell.py | 11 ++-- xfel/ui/command_line/plot_reflection_stats.py | 6 +- .../command_line/plot_uc_cloud_from_experiments.py | 6 +- 39 files changed, 164 insertions(+), 186 deletions(-) Current branch master is up to date. Already up to date. Current branch master is up to date. ===== Running in modules: extracting files from clipper.gz ===== Running in modules\cbflib: git pull --rebase ===== Running in modules\cctbx_project: git pull --rebase ===== Running in modules\annlib_adaptbx: git pull --rebase ===== Downloading http://cci.lbl.gov/repositories/tntbx.gz: 38.0 kB [0%.........20%.........40%.........60%.........80%.........100%] From https://github.com/cctbx/dxtbx 0a57ace..ba5c418 master -> origin/master Updating 0a57ace..ba5c418 Fast-forward command_line/image_average.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) Current branch master is up to date. ===== Running in modules: extracting files from tntbx.gz ===== Running in modules\dxtbx: git pull --rebase ===== Downloading http://cci.lbl.gov/repositories/ccp4io_adaptbx.gz: 203.9 kB [0%.........20%.........40%.........60%.........80%.........100%] Already up to date. Current branch master is up to date. ===== Running in modules: extracting files from ccp4io_adaptbx.gz ===== Running in modules\boost: git pull --rebase ===== Downloading http://cci.lbl.gov/repositories/gui_resources.gz: 2.1 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from gui_resources.gz removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules, walk? True removed 0 files Bootstrap success: cleanup, hot, update 16/11/2019 12:01:19.51 16/11/2019 12:01:19.57 Performing actions: base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=cctbx Traceback (most recent call last): File "bootstrap.py", line 2723, in run() File "bootstrap.py", line 2718, in run use_conda=options.use_conda, File "bootstrap.py", line 1119, in __init__ self.add_configure() File "bootstrap.py", line 1755, in add_configure self.python_base = self._get_conda_python() File "bootstrap.py", line 1513, in _get_conda_python m = self._get_conda_manager() File "bootstrap.py", line 1503, in _get_conda_manager check_file=check_file, log=log) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\auto_build\install_conda.py", line 329, in __init__ env=self.env)) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\auto_build\install_conda.py", line 57, in check_output returncode = subprocess.check_call(command_list, stdout=f, *args, **kwargs) File "C:\Python27amd64\lib\subprocess.py", line 190, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmd', '/c', 'C:\\Users\\phaserbuilder\\PhaserTng2\\mc3\\Scripts\\conda.exe', 'info', '--json']' returned non-zero exit status 1 16/11/2019 12:01:23.68