01/05/2020 12:00:49.36 01/05/2020 12:00:54.20 C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) Performing actions: cleanup hot update ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Downloading http://cci.lbl.gov/repositories/annlib.gz: 0.5 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from annlib.gz Existing non-git directory -- don't know what to do. skipping: scons ===== Downloading http://cci.lbl.gov/repositories/ccp4io.gz: 1.4 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from ccp4io.gz ===== Downloading http://cci.lbl.gov/repositories/eigen.gz: 1.5 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from eigen.gz ===== Downloading http://cci.lbl.gov/repositories/clipper.gz: 0.6 MB [0%.........20%.........40%.........60%.........80%.........100%] From https://github.com/yayahjb/cbflib d7889e3..bc8faee master -> origin/master Updating d7889e3..bc8faee Fast-forward src/cbf.c | 4 ++-- src/cbf_copy.c | 4 ++-- src/cbf_hdf5.c | 11 ++++++++--- src/img.c | 2 +- 4 files changed, 13 insertions(+), 8 deletions(-) Current branch master is up to date. From https://github.com/cctbx/cctbx_project c606245e6..26feebb26 master -> origin/master 4911d59c8..55392000f NGL_HKLviewer2 -> origin/NGL_HKLviewer2 725572ba7..5fa3a75fe diffBragg -> origin/diffBragg b8e4f6cd0..8163dcf06 iota -> origin/iota + e30249cd5...536381fbe newpy -> origin/newpy (forced update) Updating c606245e6..26feebb26 Fast-forward .azure-pipelines/xfel/conda-linux.yml | 2 +- .azure-pipelines/xfel/unix-conda-build.yml | 37 +- .gitattributes | 20 - dxtbx/README.md | 28 - iota/README.md | 21 + iota/__init__.py | 81 - iota/command_line/iota_filter_pickles.py | 135 - iota/command_line/iota_gui_launch.py | 86 - iota/command_line/iota_run.py | 187 -- iota/command_line/iota_single_image.py | 156 -- iota/command_line/iota_track_images.py | 35 - iota/components/__init__.py | 0 iota/components/gui/__init__.py | 968 -------- iota/components/gui/base.py | 369 --- iota/components/gui/controls.py | 1945 --------------- iota/components/gui/dialogs.py | 2585 -------------------- iota/components/gui/phil_controls.py | 2705 --------------------- iota/components/gui/plotter.py | 349 --- iota/components/iota_analysis.py | 864 ------- iota/components/iota_base.py | 917 ------- iota/components/iota_cctbx_ha14.py | 1182 --------- iota/components/iota_image.py | 80 - iota/components/iota_init.py | 349 --- iota/components/iota_input.py | 703 ------ iota/components/iota_processing.py | 769 ------ iota/components/iota_threads.py | 1121 --------- iota/components/iota_tracker.py | 1102 --------- iota/components/iota_ui_frames.py | 2553 ------------------- iota/components/iota_utils.py | 1013 -------- iota/components/iota_vis_integration.py | 155 -- iota/doc/NOTES.txt | 32 - iota/libtbx_config | 3 - iotbx/command_line/split_data_cif.py | 8 + {iota/command_line => iotbx/programs}/__init__.py | 0 iotbx/programs/split_data_cif.py | 108 + iotbx/regression/tst_split_data_cif.py | 389 +++ iotbx/run_tests.py | 1 + libtbx/SConscript | 7 +- libtbx/auto_build/bootstrap.py | 16 +- libtbx/auto_build/install_conda.py | 6 +- libtbx/command_line/install.py | 6 + libtbx/program_template.py | 4 +- mmtbx/command_line/cif_as_mtz.py | 10 +- mmtbx/geometry_restraints/ramachandran.py | 6 +- mmtbx/monomer_library/pdb_interpretation.py | 1 + smtbx/command_line/anom_refine.py | 65 +- smtbx/regression/tst_commandline_anomrefine.py | 18 +- 47 files changed, 657 insertions(+), 20540 deletions(-) delete mode 100644 dxtbx/README.md create mode 100644 iota/README.md delete mode 100644 iota/__init__.py delete mode 100644 iota/command_line/iota_filter_pickles.py delete mode 100644 iota/command_line/iota_gui_launch.py delete mode 100644 iota/command_line/iota_run.py delete mode 100644 iota/command_line/iota_single_image.py delete mode 100644 iota/command_line/iota_track_images.py delete mode 100644 iota/components/__init__.py delete mode 100644 iota/components/gui/__init__.py delete mode 100644 iota/components/gui/base.py delete mode 100644 iota/components/gui/controls.py delete mode 100644 iota/components/gui/dialogs.py delete mode 100644 iota/components/gui/phil_controls.py delete mode 100644 iota/components/gui/plotter.py delete mode 100644 iota/components/iota_analysis.py delete mode 100644 iota/components/iota_base.py delete mode 100644 iota/components/iota_cctbx_ha14.py delete mode 100644 iota/components/iota_image.py delete mode 100644 iota/components/iota_init.py delete mode 100644 iota/components/iota_input.py delete mode 100644 iota/components/iota_processing.py delete mode 100644 iota/components/iota_threads.py delete mode 100644 iota/components/iota_tracker.py delete mode 100644 iota/components/iota_ui_frames.py delete mode 100644 iota/components/iota_utils.py delete mode 100644 iota/components/iota_vis_integration.py delete mode 100644 iota/doc/NOTES.txt delete mode 100644 iota/libtbx_config create mode 100644 iotbx/command_line/split_data_cif.py rename {iota/command_line => iotbx/programs}/__init__.py (100%) create mode 100644 iotbx/programs/split_data_cif.py create mode 100644 iotbx/regression/tst_split_data_cif.py Current branch master is up to date. Already up to date. Current branch master is up to date. ===== Running in modules: extracting files from clipper.gz ===== Running in modules\cbflib: git pull --rebase ===== Running in modules\cctbx_project: git pull --rebase ===== Running in modules\annlib_adaptbx: git pull --rebase ===== Downloading http://cci.lbl.gov/repositories/tntbx.gz: 38.0 kB [0%.........20%.........40%.........60%.........80%.........100%] From https://github.com/cctbx/dxtbx 86f9d42..1e8b9d9 master -> origin/master * [new branch] dxtbx-with-c++-image-readers -> origin/dxtbx-with-c++-image-readers * [new branch] signed_char -> origin/signed_char Updating 86f9d42..1e8b9d9 Fast-forward datablock.py | 5 +- format/FormatEigerStream.py | 3 +- format/FormatHDF5EigerNearlyNexus.py | 4 +- format/FormatNexus.py | 4 +- format/boost_python/image_ext.cc | 54 --- format/cbf_reader.h | 612 ------------------------ format/hdf5_reader.h | 219 --------- format/image.py | 10 - format/image_reader.h | 124 ----- format/nexus.py | 94 ++-- format/smv_reader.h | 314 ------------ format/tiff_reader.h | 149 ------ model/detector.py | 2 +- newsfragments/156.bugfix | 1 + newsfragments/164.misc | 1 + newsfragments/README.MD | 13 + tests/command_line/test_average.py | 4 +- tests/format/test_FormatCBFMiniPilatusDLS12M.py | 1 + tests/format/test_FormatHDF5EigerNearlyNexus.py | 41 ++ tests/test_image_readers.py | 289 +---------- tests/test_imageset.py | 5 +- 21 files changed, 107 insertions(+), 1842 deletions(-) delete mode 100644 format/cbf_reader.h delete mode 100644 format/hdf5_reader.h delete mode 100644 format/image_reader.h delete mode 100644 format/smv_reader.h delete mode 100644 format/tiff_reader.h create mode 100644 newsfragments/156.bugfix create mode 100644 newsfragments/164.misc create mode 100644 newsfragments/README.MD Current branch master is up to date. ===== Running in modules: extracting files from tntbx.gz ===== Running in modules\dxtbx: git pull --rebase ===== Downloading http://cci.lbl.gov/repositories/ccp4io_adaptbx.gz: 203.9 kB [0%.........20%.........40%.........60%.........80%.........100%] Already up to date. Current branch master is up to date. ===== Running in modules: extracting files from ccp4io_adaptbx.gz ===== Running in modules\boost: git pull --rebase ===== Downloading http://cci.lbl.gov/repositories/gui_resources.gz: 2.1 MB [0%.........20%.........40%.........60%.........80%.........100%] ===== Running in modules: extracting files from gui_resources.gz removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules, walk? True removed 1 files Bootstrap success: cleanup, hot, update 01/05/2020 12:14:55.84 01/05/2020 12:15:02.99 C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. Base conda installation: C:\Users\phaserbuilder\PhenixTestBuilds\phasertng\mc3 Installing cctbx environment with: C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\auto_build\conda_envs\cctbx_py27_win-64.txt Completed installation into: C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base Python: 2.7.15 "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\python.exe" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: True Use opt_resources if available: False Use environment flags: False Enable C++11: False command_version_suffix: None Relocatable paths anchored at: c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build Top-down list of all modules involved: wxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\wxtbx" gltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx" mmtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx" dxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx" iotbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx" ccp4io+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io_adaptbx" smtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx" ucif "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\ucif" cbflib+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cbflib" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx" cctbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx" scitbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx" fable "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\fable" omptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\omptbx" boost+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\boost" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx" tbxx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\tbxx" chiltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\chiltbx" libtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx" Creating files in build directory: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build" dispatcher_include_template.bat setpaths.bat setpaths_all.bat setpaths_debug.bat unsetpaths.bat SConstruct Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\fable\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\wxtbx\command_line" ================================================================================ WARNING: Can not find conda package in your environment You will have to keep track of dependencies yourself ================================================================================ Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx\libtbx_refresh.py" Generating C++ header files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\scitbx\array_family" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\scitbx\array_family\boost_python" Using fable to convert scitbx\lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder running egg_info creating libtbx.scitbx.egg-info writing libtbx.scitbx.egg-info\PKG-INFO writing top-level names to libtbx.scitbx.egg-info\top_level.txt writing dependency_links to libtbx.scitbx.egg-info\dependency_links.txt writing entry points to libtbx.scitbx.egg-info\entry_points.txt writing manifest file 'libtbx.scitbx.egg-info\SOURCES.txt' reading manifest file 'libtbx.scitbx.egg-info\SOURCES.txt' writing manifest file 'libtbx.scitbx.egg-info\SOURCES.txt' Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\cctbx\eltbx" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\cctbx\boost_python" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\libtbx_refresh.py" Copying to lib: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cbflib\pycbf\pycbf.py" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\smtbx\boost_python" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx\libtbx_refresh.py" Using fable to convert iotbx\pdb\hybrid_36_f.f Writing: iotbx\pdb\hybrid_36_fem.cpp Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx\libtbx_refresh.py" Enumerating format classes: found FormatBruker based on ['Format'] found FormatBrukerFixedChi based on ['FormatBruker'] found FormatBrukerPhotonII based on ['FormatBruker'] found FormatCBF based on ['Format'] found FormatCBFCspad based on ['FormatCBFMultiTileHierarchyStill'] found FormatCBFFullStillInMemory based on ['FormatCBFFullStill'] found FormatCBFMultiTileHierarchyStillInMemory based on ['FormatCBFFullStillInMemory', 'FormatCBFMultiTileHierarchyStill'] found FormatCBFCspadInMemory based on ['FormatCBFMultiTileHierarchyStillInMemory', 'FormatCBFCspad'] found FormatCBFFull based on ['FormatCBF'] found FormatCBFFullStill based on ['FormatStill', 'FormatCBFFull'] found FormatCBFFullPilatus based on ['FormatCBFFull'] found FormatCBFFullPilatusDLS300KSN104 based on ['FormatCBFFullPilatus'] found FormatCBFFullPilatusDLS6MSN100 based on ['FormatCBFFullPilatus'] found FormatCBFFullPilatusDLS6MSN126 based on ['FormatCBFFullPilatus'] found FormatCBFMini based on ['FormatCBF'] found FormatCBFMiniADSCHF4M based on ['FormatCBFMini'] found FormatCBFMiniEiger based on ['FormatCBFMini'] found FormatCBFMiniEigerDLS16MSN160 based on ['FormatCBFMiniEiger'] found FormatCBFMiniEigerMaxIVBio based on ['FormatCBFMiniEiger'] found FormatCBFMiniEigerPetraP14 based on ['FormatCBFMiniEiger'] found FormatCBFMiniEigerPhotonFactory based on ['FormatCBFMini'] found FormatCBFMiniPilatus based on ['FormatCBFMini'] found FormatCBFMiniPilatus3AOS19ID6MSN132 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusCHESS_6MSN127 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDESY6MSN115 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS12M based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN100 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN114 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN114DMM based on ['FormatCBFMiniPilatus', 'FormatStill'] found FormatCBFMiniPilatusDLS6MSN119 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN126 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusSOLEILPX16MSN106 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusSPring8_6MSN125 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusXXX based on ['FormatCBFMiniPilatus'] found FormatCBFMultiTile based on ['FormatCBFFull'] found FormatCBFMultiTileStill based on ['FormatStill', 'FormatCBFMultiTile'] found FormatCBFMultiTileHierarchy based on ['FormatCBFMultiTile'] found FormatCBFMultiTileHierarchyStill based on ['FormatCBFMultiTileStill', 'FormatCBFMultiTileHierarchy'] found FormatDIP2030b based on ['Format'] found FormatEDFALS733 based on ['Format'] found FormatEigerStream based on ['FormatMultiImage', 'Format'] found FormatGatanDM4 based on ['FormatMultiImage', 'Format'] found FormatHDF5 based on ['FormatMultiImage', 'Format'] found FormatHDF5EigerNearlyNexus based on ['FormatHDF5'] found FormatHDF5EigerNearlyNexusSPring8 based on ['FormatHDF5EigerNearlyNexus'] found FormatHDF5Lambda based on ['FormatHDF5'] found FormatHDF5PAL based on ['FormatHDF5'] found FormatRawData based on ['FormatHDF5'] found FormatHDF5Sacla based on ['FormatHDF5', 'FormatStill'] found FormatHDF5SaclaMPCCD based on ['FormatHDF5', 'FormatStill'] found FormatHDF5SaclaRayonix based on ['FormatHDF5', 'FormatStill'] found FormatMarIP based on ['Format'] found FormatMultiImage based on ['Format'] found FormatMultiImageLazy based on ['FormatMultiImage'] found FormatNexus based on ['FormatHDF5'] found FormatNexusStill based on ['FormatMultiImageLazy', 'FormatNexus', 'FormatStill'] found FormatNexusEigerDLS16M based on ['FormatNexus'] found FormatNexusExternalDataFile based on ['FormatHDF5'] found FormatNexusJungfrauHack based on ['FormatNexus'] found FormatPY based on ['Format'] found FormatPYmultitile based on ['FormatPY'] found FormatPYunspecified based on ['FormatPY'] found FormatPYunspecifiedInMemory based on ['FormatPYunspecified'] found FormatPYunspecifiedStill based on ['FormatStill', 'FormatPYunspecified'] found FormatPYunspecifiedStillInMemory based on ['FormatStill', 'FormatPYunspecifiedInMemory'] found FormatRAXIS based on ['Format'] found FormatRAXISII based on ['Format'] found FormatRAXISIVSPring8 based on ['Format'] found FormatSER based on ['FormatMultiImage', 'Format'] found FormatSEReBIC based on ['FormatSER'] found FormatSMV based on ['Format'] found FormatSMVADSC based on ['FormatSMV'] found FormatSMVADSCDBG based on ['FormatSMVADSC'] found FormatSMVADSCNoDateStamp based on ['FormatSMVADSC'] found FormatSMVADSCSN based on ['FormatSMVADSC'] found FormatSMVADSCSN445 based on ['FormatSMVADSCSN'] found FormatSMVADSCSNSN457 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN905 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN915 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN920 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN926 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN928 based on ['FormatSMVADSCSN'] found FormatSMVADSCSNAPSID19 based on ['FormatSMVADSCSN'] found FormatSMVADSCmlfsom based on ['FormatSMVADSC'] found FormatSMVCMOS1 based on ['FormatSMV'] found FormatSMVHamamatsu based on ['FormatSMVADSC'] found FormatSMVHamamatsuSPring8BL32XU based on ['FormatSMVHamamatsu'] found FormatSMVJHSim based on ['FormatSMV'] found FormatSMVNOIR based on ['FormatSMVRigaku'] found FormatSMVRigaku based on ['FormatSMV'] found FormatSMVRigakuA200 based on ['FormatSMVRigaku'] found FormatSMVRigakuA200SPring8BL26B1 based on ['FormatSMVRigakuA200'] found FormatSMVRigakuEiger based on ['FormatSMVRigaku'] found FormatSMVRigakuPilatus based on ['FormatSMVRigaku'] found FormatSMVRigakuSaturn based on ['FormatSMVRigaku'] found FormatSMVRigakuSaturnNoTS based on ['FormatSMVRigaku'] found FormatSMVRigakuSaturnSN07400090 based on ['FormatSMVRigakuSaturn'] found FormatSMVRigakuSaturn09040159 based on ['FormatSMVRigakuSaturnNoTS'] found FormatSMVRigakuSaturnSN11480296 based on ['FormatSMVRigakuSaturn'] found FormatSMVTimePix_SU based on ['FormatSMV'] found FormatSMVTimePix_SU_512x512 based on ['FormatSMVTimePix_SU'] found FormatSMVTimePix_SU_516x516 based on ['FormatSMVTimePix_SU'] found FormatStill based on ['Format'] found FormatTIFF based on ['Format'] found FormatTIFFBruker based on ['FormatTIFF'] found FormatTIFFRayonix based on ['FormatTIFF'] found FormatTIFFRayonixESRF based on ['FormatTIFFRayonix'] found FormatTIFFRayonixSPring8 based on ['FormatTIFFRayonix'] found FormatTIFFRayonixXPP based on ['FormatTIFFRayonix'] found FormatXDS based on ['Format'] found FormatXTC based on ['FormatMultiImageLazy', 'FormatStill', 'Format'] found FormatXTCCspad based on ['FormatXTC'] found FormatXTCJungfrau based on ['FormatXTC'] found FormatXTCJungfrauMonolithic based on ['FormatXTCJungfrau'] found FormatXTCMultipleDetectors based on ['FormatXTCRayonix', 'FormatXTCCspad', 'FormatXTCJungfrau'] found FormatXTCRayonix based on ['FormatXTC'] Updating entry points for dxtbx 116 entries for entry point dxtbx.format running egg_info creating libtbx.dxtbx.egg-info writing libtbx.dxtbx.egg-info\PKG-INFO writing top-level names to libtbx.dxtbx.egg-info\top_level.txt writing dependency_links to libtbx.dxtbx.egg-info\dependency_links.txt writing entry points to libtbx.dxtbx.egg-info\entry_points.txt writing manifest file 'libtbx.dxtbx.egg-info\SOURCES.txt' reading manifest file 'libtbx.dxtbx.egg-info\SOURCES.txt' writing manifest file 'libtbx.dxtbx.egg-info\SOURCES.txt' Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\gltbx" fonts: 8x13 9x15 10x20 Done. Base conda installation: C:\Users\phaserbuilder\PhenixTestBuilds\phasertng\mc3 conda_setpaths.bat has been written successfully. conda_unsetpaths.bat has been written successfully. usr+sys time: 0.88 seconds wall clock time: 0.87 seconds usage: scons [OPTION] [TARGET] ... SCons Error: option -j: invalid integer value: 'getbootstrap' Performing actions: base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=cctbx --install_conda ===== Running in .: deleting dist, tests, tmp removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules, walk? True removed 2 files ===== Running in .: base ===== Running in build: run configure.py ===== Running in build: save configure command ===== Running in build: Writing additional setup scripts for conda. ===== Running in build: libtbx.scons.bat Process failed with return code 2 01/05/2020 12:24:32.14 C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. Python: 2.7.15 "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\python.exe" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: True Use opt_resources if available: False Use environment flags: False Enable C++11: False command_version_suffix: None Relocatable paths anchored at: c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build Top-down list of all modules involved: wxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\wxtbx" gltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx" mmtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx" dxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx" iotbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx" ccp4io+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io_adaptbx" smtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx" ucif "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\ucif" cbflib+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cbflib" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx" cctbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx" scitbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx" fable "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\fable" omptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\omptbx" boost+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\boost" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx" tbxx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\tbxx" chiltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\chiltbx" libtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx" Creating files in build directory: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build" dispatcher_include_template.bat setpaths.bat setpaths_all.bat setpaths_debug.bat unsetpaths.bat SConstruct Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\fable\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx\command_line" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\wxtbx\command_line" ================================================================================ WARNING: Can not find conda package in your environment You will have to keep track of dependencies yourself ================================================================================ Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx\libtbx_refresh.py" Generating C++ header files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\scitbx\array_family" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\scitbx\array_family\boost_python" Using fable to convert scitbx\lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder running egg_info writing libtbx.scitbx.egg-info\PKG-INFO writing top-level names to libtbx.scitbx.egg-info\top_level.txt writing dependency_links to libtbx.scitbx.egg-info\dependency_links.txt writing entry points to libtbx.scitbx.egg-info\entry_points.txt reading manifest file 'libtbx.scitbx.egg-info\SOURCES.txt' writing manifest file 'libtbx.scitbx.egg-info\SOURCES.txt' Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\cctbx\eltbx" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\cctbx\boost_python" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx\libtbx_refresh.py" Copying to lib: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cbflib\pycbf\pycbf.py" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\include\smtbx\boost_python" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx\libtbx_refresh.py" Using fable to convert iotbx\pdb\hybrid_36_f.f Writing: iotbx\pdb\hybrid_36_fem.cpp Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx\libtbx_refresh.py" Enumerating format classes: found FormatBruker based on ['Format'] found FormatBrukerFixedChi based on ['FormatBruker'] found FormatBrukerPhotonII based on ['FormatBruker'] found FormatCBF based on ['Format'] found FormatCBFCspad based on ['FormatCBFMultiTileHierarchyStill'] found FormatCBFFullStillInMemory based on ['FormatCBFFullStill'] found FormatCBFMultiTileHierarchyStillInMemory based on ['FormatCBFFullStillInMemory', 'FormatCBFMultiTileHierarchyStill'] found FormatCBFCspadInMemory based on ['FormatCBFMultiTileHierarchyStillInMemory', 'FormatCBFCspad'] found FormatCBFFull based on ['FormatCBF'] found FormatCBFFullStill based on ['FormatStill', 'FormatCBFFull'] found FormatCBFFullPilatus based on ['FormatCBFFull'] found FormatCBFFullPilatusDLS300KSN104 based on ['FormatCBFFullPilatus'] found FormatCBFFullPilatusDLS6MSN100 based on ['FormatCBFFullPilatus'] found FormatCBFFullPilatusDLS6MSN126 based on ['FormatCBFFullPilatus'] found FormatCBFMini based on ['FormatCBF'] found FormatCBFMiniADSCHF4M based on ['FormatCBFMini'] found FormatCBFMiniEiger based on ['FormatCBFMini'] found FormatCBFMiniEigerDLS16MSN160 based on ['FormatCBFMiniEiger'] found FormatCBFMiniEigerMaxIVBio based on ['FormatCBFMiniEiger'] found FormatCBFMiniEigerPetraP14 based on ['FormatCBFMiniEiger'] found FormatCBFMiniEigerPhotonFactory based on ['FormatCBFMini'] found FormatCBFMiniPilatus based on ['FormatCBFMini'] found FormatCBFMiniPilatus3AOS19ID6MSN132 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusCHESS_6MSN127 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDESY6MSN115 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS12M based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN100 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN114 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN114DMM based on ['FormatCBFMiniPilatus', 'FormatStill'] found FormatCBFMiniPilatusDLS6MSN119 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusDLS6MSN126 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusSOLEILPX16MSN106 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusSPring8_6MSN125 based on ['FormatCBFMiniPilatus'] found FormatCBFMiniPilatusXXX based on ['FormatCBFMiniPilatus'] found FormatCBFMultiTile based on ['FormatCBFFull'] found FormatCBFMultiTileStill based on ['FormatStill', 'FormatCBFMultiTile'] found FormatCBFMultiTileHierarchy based on ['FormatCBFMultiTile'] found FormatCBFMultiTileHierarchyStill based on ['FormatCBFMultiTileStill', 'FormatCBFMultiTileHierarchy'] found FormatDIP2030b based on ['Format'] found FormatEDFALS733 based on ['Format'] found FormatEigerStream based on ['FormatMultiImage', 'Format'] found FormatGatanDM4 based on ['FormatMultiImage', 'Format'] found FormatHDF5 based on ['FormatMultiImage', 'Format'] found FormatHDF5EigerNearlyNexus based on ['FormatHDF5'] found FormatHDF5EigerNearlyNexusSPring8 based on ['FormatHDF5EigerNearlyNexus'] found FormatHDF5Lambda based on ['FormatHDF5'] found FormatHDF5PAL based on ['FormatHDF5'] found FormatRawData based on ['FormatHDF5'] found FormatHDF5Sacla based on ['FormatHDF5', 'FormatStill'] found FormatHDF5SaclaMPCCD based on ['FormatHDF5', 'FormatStill'] found FormatHDF5SaclaRayonix based on ['FormatHDF5', 'FormatStill'] found FormatMarIP based on ['Format'] found FormatMultiImage based on ['Format'] found FormatMultiImageLazy based on ['FormatMultiImage'] found FormatNexus based on ['FormatHDF5'] found FormatNexusStill based on ['FormatMultiImageLazy', 'FormatNexus', 'FormatStill'] found FormatNexusEigerDLS16M based on ['FormatNexus'] found FormatNexusExternalDataFile based on ['FormatHDF5'] found FormatNexusJungfrauHack based on ['FormatNexus'] found FormatPY based on ['Format'] found FormatPYmultitile based on ['FormatPY'] found FormatPYunspecified based on ['FormatPY'] found FormatPYunspecifiedInMemory based on ['FormatPYunspecified'] found FormatPYunspecifiedStill based on ['FormatStill', 'FormatPYunspecified'] found FormatPYunspecifiedStillInMemory based on ['FormatStill', 'FormatPYunspecifiedInMemory'] found FormatRAXIS based on ['Format'] found FormatRAXISII based on ['Format'] found FormatRAXISIVSPring8 based on ['Format'] found FormatSER based on ['FormatMultiImage', 'Format'] found FormatSEReBIC based on ['FormatSER'] found FormatSMV based on ['Format'] found FormatSMVADSC based on ['FormatSMV'] found FormatSMVADSCDBG based on ['FormatSMVADSC'] found FormatSMVADSCNoDateStamp based on ['FormatSMVADSC'] found FormatSMVADSCSN based on ['FormatSMVADSC'] found FormatSMVADSCSN445 based on ['FormatSMVADSCSN'] found FormatSMVADSCSNSN457 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN905 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN915 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN920 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN926 based on ['FormatSMVADSCSN'] found FormatSMVADSCSN928 based on ['FormatSMVADSCSN'] found FormatSMVADSCSNAPSID19 based on ['FormatSMVADSCSN'] found FormatSMVADSCmlfsom based on ['FormatSMVADSC'] found FormatSMVCMOS1 based on ['FormatSMV'] found FormatSMVHamamatsu based on ['FormatSMVADSC'] found FormatSMVHamamatsuSPring8BL32XU based on ['FormatSMVHamamatsu'] found FormatSMVJHSim based on ['FormatSMV'] found FormatSMVNOIR based on ['FormatSMVRigaku'] found FormatSMVRigaku based on ['FormatSMV'] found FormatSMVRigakuA200 based on ['FormatSMVRigaku'] found FormatSMVRigakuA200SPring8BL26B1 based on ['FormatSMVRigakuA200'] found FormatSMVRigakuEiger based on ['FormatSMVRigaku'] found FormatSMVRigakuPilatus based on ['FormatSMVRigaku'] found FormatSMVRigakuSaturn based on ['FormatSMVRigaku'] found FormatSMVRigakuSaturnNoTS based on ['FormatSMVRigaku'] found FormatSMVRigakuSaturnSN07400090 based on ['FormatSMVRigakuSaturn'] found FormatSMVRigakuSaturn09040159 based on ['FormatSMVRigakuSaturnNoTS'] found FormatSMVRigakuSaturnSN11480296 based on ['FormatSMVRigakuSaturn'] found FormatSMVTimePix_SU based on ['FormatSMV'] found FormatSMVTimePix_SU_512x512 based on ['FormatSMVTimePix_SU'] found FormatSMVTimePix_SU_516x516 based on ['FormatSMVTimePix_SU'] found FormatStill based on ['Format'] found FormatTIFF based on ['Format'] found FormatTIFFBruker based on ['FormatTIFF'] found FormatTIFFRayonix based on ['FormatTIFF'] found FormatTIFFRayonixESRF based on ['FormatTIFFRayonix'] found FormatTIFFRayonixSPring8 based on ['FormatTIFFRayonix'] found FormatTIFFRayonixXPP based on ['FormatTIFFRayonix'] found FormatXDS based on ['Format'] found FormatXTC based on ['FormatMultiImageLazy', 'FormatStill', 'Format'] found FormatXTCCspad based on ['FormatXTC'] found FormatXTCJungfrau based on ['FormatXTC'] found FormatXTCJungfrauMonolithic based on ['FormatXTCJungfrau'] found FormatXTCMultipleDetectors based on ['FormatXTCRayonix', 'FormatXTCCspad', 'FormatXTCJungfrau'] found FormatXTCRayonix based on ['FormatXTC'] Updating entry points for dxtbx 116 entries for entry point dxtbx.format running egg_info writing libtbx.dxtbx.egg-info\PKG-INFO writing top-level names to libtbx.dxtbx.egg-info\top_level.txt writing dependency_links to libtbx.dxtbx.egg-info\dependency_links.txt writing entry points to libtbx.dxtbx.egg-info\entry_points.txt reading manifest file 'libtbx.dxtbx.egg-info\SOURCES.txt' writing manifest file 'libtbx.dxtbx.egg-info\SOURCES.txt' Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx\libtbx_refresh.py" Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx\libtbx_refresh.py" Generating C++ files in: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build\gltbx" Info: Re-using existing font cpp files. Hint: Remove gltbx\FONTS_UCS_DONE_FLAG_FILE to force generation of new font files. Done. Base conda installation: C:\Users\phaserbuilder\PhenixTestBuilds\phasertng\mc3 conda_setpaths.bat has been written successfully. conda_unsetpaths.bat has been written successfully. usr+sys time: 0.80 seconds wall clock time: 0.80 seconds usage: scons [OPTION] [TARGET] ... SCons Error: option -j: invalid integer value: 'getbootstrap' Performing actions: build ===== Running in .: deleting dist, tests, tmp removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules, walk? True removed 2 files ===== Running in build: run configure.py ===== Running in build: save configure command ===== Running in build: Writing additional setup scripts for conda. ===== Running in build: libtbx.scons.bat Process failed with return code 2 01/05/2020 12:48:22.06