19/08/2020 12:00:28.82 19/08/2020 12:00:30.92 C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) Already up to date. Current branch master is up to date. From https://github.com/cctbx/cctbx_project 2f5a8a537..2ad2c1cc1 master -> origin/master + 580140491...2e4e90bce fix-boost -> origin/fix-boost (forced update) Updating 2f5a8a537..2ad2c1cc1 Fast-forward boost/__init__.py | 2 - boost/optional.py | 13 +- boost/python.py | 266 +-------------------- boost/rational.py | 39 +-- boost/std_pair.py | 13 +- boost/tuple.py | 13 +- boost_adaptbx/boost/__init__.py | 2 + boost_adaptbx/boost/optional.py | 4 + boost_adaptbx/boost/python.py | 256 ++++++++++++++++++++ boost_adaptbx/boost/rational.py | 30 +++ boost_adaptbx/boost/std_pair.py | 4 + boost_adaptbx/boost/tuple.py | 4 + boost_adaptbx/command_line/divide_by_zero.py | 12 +- boost_adaptbx/command_line/double_overflow.py | 6 +- boost_adaptbx/command_line/gcd.py | 2 +- boost_adaptbx/command_line/inexact.py | 4 +- boost_adaptbx/command_line/int_overflow.py | 6 +- boost_adaptbx/command_line/lcm.py | 2 +- .../nested_cpp_loops_with_check_signals.py | 4 +- boost_adaptbx/command_line/segmentation_fault.py | 4 +- boost_adaptbx/command_line/show_platform_info.py | 8 +- boost_adaptbx/graph/__init__.py | 5 +- boost_adaptbx/graph/breadth_first_search.py | 5 +- boost_adaptbx/graph/clustering_algorithm.py | 4 +- .../graph/connected_component_algorithm.py | 5 +- boost_adaptbx/graph/graph_structure_comparison.py | 5 +- boost_adaptbx/graph/maximum_clique.py | 5 +- boost_adaptbx/graph/metric.py | 4 +- boost_adaptbx/graph/min_cut_max_flow.py | 4 +- boost_adaptbx/graph/tests/tst_graph.py | 1 - .../tst_graph_connected_component_algorithm.py | 1 - .../tests/tst_graph_graph_structure_comparison.py | 1 - boost_adaptbx/graph/utility.py | 4 +- boost_adaptbx/tests/tst_boost_thread.py | 4 +- boost_adaptbx/tests/tst_libc_backtrace.py | 6 +- boost_adaptbx/tests/tst_optional.py | 18 +- boost_adaptbx/tests/tst_python_streambuf.py | 6 +- boost_adaptbx/tests/tst_rational.py | 2 +- boost_adaptbx/tests/tst_std_pair.py | 12 +- boost_adaptbx/tests/tst_stderr_stdout.py | 6 +- boost_adaptbx/tests/tst_stdin.py | 6 +- boost_adaptbx/tests/tst_stdout.py | 6 +- boost_adaptbx/tests/tst_string_representation.py | 4 +- boost_adaptbx/tests/tst_tuple.py | 8 +- cctbx/adp_restraints/__init__.py | 32 +-- cctbx/adptbx.py | 4 +- cctbx/anharmonic.py | 4 +- cctbx/array_family/flex.py | 4 +- cctbx/covariance/__init__.py | 4 +- cctbx/crystal/__init__.py | 12 +- cctbx/crystal/direct_space_asu.py | 6 +- cctbx/crystal_orientation.py | 6 +- cctbx/dmtbx.py | 8 +- cctbx/eltbx/attenuation_coefficient.py | 4 +- cctbx/eltbx/chemical_elements.py | 4 +- cctbx/eltbx/covalent_radii.py | 6 +- cctbx/eltbx/fp_fdp.py | 4 +- cctbx/eltbx/henke.py | 6 +- cctbx/eltbx/icsd_radii.py | 6 +- cctbx/eltbx/neutron.py | 6 +- cctbx/eltbx/sasaki.py | 6 +- cctbx/eltbx/tiny_pse.py | 6 +- cctbx/eltbx/wavelengths.py | 6 +- cctbx/eltbx/xray_scattering/__init__.py | 10 +- cctbx/euclidean_model_matching.py | 4 +- cctbx/examples/merging/__init__.py | 4 +- cctbx/geometry/__init__.py | 4 +- cctbx/geometry_restraints/__init__.py | 42 ++-- cctbx/geometry_restraints/energies.py | 4 +- cctbx/geometry_restraints/manager.py | 4 +- cctbx/maptbx/__init__.py | 10 +- cctbx/maptbx/mask.py | 4 +- cctbx/maptbx/tst_asymmetric_map.py | 4 +- cctbx/maptbx/tst_interpolation_2.py | 4 +- cctbx/masks/__init__.py | 6 +- cctbx/math_module.py | 4 +- cctbx/merging/__init__.py | 4 +- cctbx/miller/__init__.py | 6 +- cctbx/multipolar.py | 5 +- cctbx/regression/tst_connectivity_allsym.py | 4 +- cctbx/regression/tst_direct_space_asu.py | 2 +- cctbx/regression/tst_french_wilson.py | 4 +- .../tst_map_weights_for_symmetry_summation.py | 4 +- cctbx/regression/tst_miller.py | 4 +- cctbx/sgtbx/__init__.py | 32 +-- cctbx/sgtbx/direct_space_asu/check_redundancies.py | 2 +- cctbx/sgtbx/direct_space_asu/cut_plane.py | 2 +- cctbx/sgtbx/direct_space_asu/facet_analysis.py | 2 +- cctbx/sgtbx/direct_space_asu/proto/__init__.py | 4 +- cctbx/sgtbx/direct_space_asu/proto/tst_asu.py | 3 +- cctbx/sgtbx/direct_space_asu/short_cuts.py | 2 +- cctbx/sgtbx/harker.py | 2 +- cctbx/sgtbx/rational_matrices_point_groups.py | 2 +- cctbx/sgtbx/reticular_pg_tools.py | 2 +- cctbx/sgtbx/sub_lattice_tools.py | 2 +- cctbx/statistics.py | 4 +- cctbx/symmetry_search.py | 4 +- cctbx/translation_search.py | 4 +- cctbx/uctbx/__init__.py | 6 +- cctbx/uctbx/determine_unit_cell/__init__.py | 4 +- cctbx/web/change_basis.py | 2 +- cctbx/xray/ext.py | 8 +- cctbx/xray/scatterer.py | 4 +- .../from_scatterers_direct_parallel.py | 2 +- cctbx/xray/structure_factors/gradient_flags.py | 4 +- clipper_adaptbx/clipper/__init__.py | 4 +- cma_es/__init__.py | 4 +- crys3d/qttbx/__init__.py | 2 +- cudatbx/__init__.py | 4 +- cudatbx/cufft/__init__.py | 16 +- cudatbx/math/special_functions/__init__.py | 4 +- cudatbx/scattering/__init__.py | 4 +- fable/__init__.py | 4 +- fast_linalg/__init__.py | 4 +- fftw3tbx/__init__.py | 4 +- gltbx/fonts.py | 6 +- gltbx/gl.py | 4 +- gltbx/glu.py | 4 +- gltbx/quadrics.py | 4 +- gltbx/util.py | 4 +- gltbx/viewer_utils.py | 4 +- iotbx/ccp4_map/__init__.py | 8 +- iotbx/cif/__init__.py | 4 +- iotbx/detectors/__init__.py | 4 +- iotbx/dsn6/__init__.py | 4 +- iotbx/dtrek/reflnlist_reader.py | 4 +- iotbx/map_model_manager.py | 7 +- iotbx/mtz/__init__.py | 18 +- iotbx/pdb/__init__.py | 8 +- iotbx/pdb/hierarchy.py | 34 +-- iotbx/regression/tst_map_manager_wrapping.py | 4 +- iotbx/scalepack/no_merge_original_index.py | 4 +- iotbx/shelx/__init__.py | 4 +- iotbx/shelx/hklf.py | 4 +- iotbx/shelx/parsers.py | 2 +- iotbx/wildcard.py | 4 +- iotbx/xplor/ext.py | 4 +- libtbx/auto_build/bootstrap.py | 71 +++--- libtbx/introspection.py | 4 +- libtbx/str_utils.py | 2 +- libtbx/tst_scheduling.py | 4 +- mmtbx/alignment/__init__.py | 4 +- mmtbx/arrays.py | 4 +- mmtbx/building/loop_closure/ccd.py | 8 +- .../loop_closure/starting_conformations.py | 4 +- mmtbx/building/loop_closure/utils.py | 4 +- mmtbx/building/loop_idealization.py | 4 +- mmtbx/bulk_solvent/__init__.py | 4 +- mmtbx/bulk_solvent/bulk_solvent_and_scaling.py | 4 +- mmtbx/bulk_solvent/example2.py | 6 +- mmtbx/bulk_solvent/mosaic.py | 8 +- mmtbx/bulk_solvent/multi_mask_bulk_solvent.py | 4 +- mmtbx/bulk_solvent/scaler.py | 4 +- mmtbx/bulk_solvent/tst_aniso_scaler.py | 4 +- mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py | 8 +- mmtbx/bulk_solvent/tst_mosaic.py | 4 +- mmtbx/bulk_solvent/tst_scaler.py | 4 +- mmtbx/cablam/cablam_align.py | 5 +- mmtbx/command_line/model_idealization.py | 4 +- mmtbx/den/__init__.py | 4 +- mmtbx/dynamics/__init__.py | 4 +- mmtbx/f_model/f_model.py | 6 +- mmtbx/geometry/asa.py | 4 +- mmtbx/geometry/clash.py | 5 +- mmtbx/geometry/indexing.py | 5 +- mmtbx/geometry/shared_types.py | 5 +- mmtbx/geometry/sphere_surface_sampling.py | 5 +- mmtbx/geometry_restraints/ramachandran.py | 6 +- mmtbx/geometry_restraints/reference.py | 8 +- mmtbx/geometry_restraints/tst_ramachandran.py | 4 +- .../tst_reference_coordinate.py | 4 +- mmtbx/hydrogens/__init__.py | 4 +- mmtbx/map_tools.py | 4 +- mmtbx/maps/composite_omit_map.py | 4 +- mmtbx/maps/correlation.py | 4 +- mmtbx/maps/tst_composite_omit_map.py | 4 +- mmtbx/maps/tst_composite_omit_map_3.py | 4 +- mmtbx/maps/tst_correlation.py | 4 +- mmtbx/masks/__init__.py | 6 +- mmtbx/masks/tst_masks.py | 4 +- mmtbx/max_lik/__init__.py | 4 +- mmtbx/max_lik/max_like_non_uniform.py | 8 +- mmtbx/model/model.py | 6 +- mmtbx/ncs/cartesian_restraints.py | 4 +- mmtbx/ncs/tncs.py | 4 +- mmtbx/pair_interaction/__init__.py | 4 +- mmtbx/pair_interaction/pair_interaction.py | 4 +- mmtbx/pair_interaction/tst_00.py | 4 +- mmtbx/pair_interaction/tst_01.py | 4 +- mmtbx/refinement/real_space/fit_residue.py | 8 +- mmtbx/refinement/real_space/fit_residues.py | 6 +- mmtbx/refinement/real_space/rigid_body.py | 4 +- mmtbx/refinement/targets.py | 4 +- mmtbx/regression/tncs/tst_epsfac_and_radius.py | 4 +- mmtbx/regression/tncs/tst_fd.py | 4 +- mmtbx/regression/tncs/tst_moments.py | 4 +- mmtbx/regression/tncs/tst_pair.py | 4 +- mmtbx/rotamer/ramachandran_eval.py | 4 +- mmtbx/rsr/__init__.py | 4 +- mmtbx/scaling/__init__.py | 4 +- mmtbx/secondary_structure/dssp.py | 4 +- mmtbx/secondary_structure/ss_validation.py | 4 +- mmtbx/solvent/__init__.py | 4 +- mmtbx/solvent/map_to_water.py | 4 +- mmtbx/tls/__init__.py | 4 +- mmtbx/tls/decompose.py | 4 +- mmtbx/tls/optimise_amplitudes.py | 5 +- mmtbx/tls/utils.py | 4 +- mmtbx/utils/__init__.py | 8 +- mmtbx/validation/comprehensive_residue.py | 4 +- omptbx/__init__.py | 4 +- prime/__init__.py | 4 +- prime/index_ambiguity/__init__.py | 4 +- rstbx/__init__.py | 4 +- rstbx/apps/__init__.py | 4 +- rstbx/array_family/flex.py | 4 +- rstbx/bandpass/__init__.py | 4 +- rstbx/bpcx/__init__.py | 4 +- rstbx/diffraction/__init__.py | 4 +- rstbx/diffraction/fastbragg/__init__.py | 6 +- rstbx/dps_core/__init__.py | 8 +- rstbx/indexing_api/__init__.py | 6 +- rstbx/indexing_api/lattice.py | 4 +- rstbx/simage/__init__.py | 4 +- rstbx/simulation/__init__.py | 4 +- rstbx/symmetry/constraints/__init__.py | 4 +- scitbx/array_family/flex.py | 24 +- scitbx/array_family/shared.py | 6 +- scitbx/cubicle_neighbors.py | 6 +- scitbx/examples/bevington/__init__.py | 6 +- scitbx/fftpack.py | 4 +- scitbx/graphics_utils/__init__.py | 4 +- scitbx/iso_surface/__init__.py | 4 +- scitbx/lbfgs/__init__.py | 4 +- scitbx/lbfgsb.py | 4 +- scitbx/linalg/ext.py | 4 +- scitbx/lstbx/normal_eqns.py | 6 +- scitbx/math/__init__.py | 2 +- scitbx/math/distributions.py | 6 +- scitbx/math/ext.py | 10 +- scitbx/math/gaussian.py | 6 +- scitbx/math/tests/tst_gcd.py | 4 +- scitbx/math/tests/tst_math.py | 4 +- scitbx/matrix/__init__.py | 4 +- scitbx/matrix/tests/tst_row_echelon.py | 2 +- scitbx/minpack.py | 4 +- scitbx/r3_utils.py | 4 +- scitbx/random/__init__.py | 6 +- scitbx/rigid_body/__init__.py | 6 +- scitbx/sparse/__init__.py | 8 +- scitbx/stl/map.py | 4 +- scitbx/stl/set.py | 4 +- scitbx/stl/vector.py | 4 +- scitbx/suffixtree/__init__.py | 4 +- scitbx/suffixtree/single.py | 4 +- scitbx/wigner/__init__.py | 4 +- simtbx/nanoBragg/__init__.py | 8 +- smtbx/ab_initio/__init__.py | 4 +- smtbx/array_family/__init__.py | 4 +- smtbx/refinement/constraints/__init__.py | 8 +- smtbx/refinement/least_squares.py | 4 +- smtbx/refinement/restraints/__init__.py | 4 +- smtbx/refinement/weighting_schemes.py | 10 +- smtbx/stl/map.py | 4 +- smtbx/structure_factors/direct/__init__.py | 4 +- spotfinder/array_family/flex.py | 4 +- spotfinder/core_toolbox/__init__.py | 8 +- spotfinder/dxtbx_toolbox/__init__.py | 4 +- xfel/__init__.py | 4 +- xfel/clustering/__init__.py | 4 +- xfel/merging/__init__.py | 4 +- xfel/merging/algorithms/error_model/__init__.py | 4 +- xfel/metrology/__init__.py | 4 +- xfel/metrology/legacy_scale/__init__.py | 4 +- xfel/mono_simulation/__init__.py | 4 +- xfel/vonHamos/__init__.py | 4 +- 276 files changed, 1069 insertions(+), 1043 deletions(-) create mode 100644 boost_adaptbx/boost/__init__.py create mode 100644 boost_adaptbx/boost/optional.py create mode 100644 boost_adaptbx/boost/python.py create mode 100644 boost_adaptbx/boost/rational.py create mode 100644 boost_adaptbx/boost/std_pair.py create mode 100644 boost_adaptbx/boost/tuple.py Current branch master is up to date. Already up to date. Current branch master is up to date. From https://github.com/cctbx/dxtbx 60ceb84..e442c35 multiimage_use_indices -> origin/multiimage_use_indices Already up to date. Current branch master is up to date. Already up to date. Current branch master is up to date. Performing actions: cleanup hot update ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: annlib Existing non-git directory -- don't know what to do. skipping: scons Existing non-git directory -- don't know what to do. skipping: ccp4io Existing non-git directory -- don't know what to do. skipping: eigen Existing non-git directory -- don't know what to do. skipping: clipper ===== Running in modules\cbflib: git pull --rebase ===== Running in modules\cctbx_project: git pull --rebase ===== Running in modules\annlib_adaptbx: git pull --rebase Existing non-git directory -- don't know what to do. skipping: tntbx ===== Running in modules\dxtbx: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\boost: git pull --rebase Existing non-git directory -- don't know what to do. skipping: gui_resources removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules, walk? True removed 217 files Bootstrap success: cleanup, hot, update 19/08/2020 12:08:27.21 19/08/2020 12:08:31.74 C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. Base conda installation: C:\Users\phaserbuilder\NightlyBuilds\PhaserVC2015\Current\mc3 Installing cctbx environment with: C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\auto_build\conda_envs\cctbx_py27_win-64.txt Completed installation into: C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base Python: 2.7.15 "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\python.exe" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: True Use opt_resources if available: False Use environment flags: False Enable C++11: False command_version_suffix: None Relocatable paths anchored at: c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build Top-down list of all modules involved: wxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\wxtbx" gltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx" crys3d "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\crys3d" cctbx_website "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx_website" mmtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx" iotbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx" dxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx" cbflib+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cbflib" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx" ccp4io+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io_adaptbx" smtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx" ucif "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\ucif" cctbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx" scitbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx" fable "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\fable" omptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\omptbx" boost+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\boost" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx" tbxx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\tbxx" chiltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\chiltbx" libtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx" Creating files in build directory: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build" dispatcher_include_template.bat setpaths.bat setpaths_all.bat setpaths_debug.bat unsetpaths.bat SConstruct Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx\command_line" Traceback (most recent call last): File "..\modules\cctbx_project\libtbx\configure.py", line 34, in if not run(): File "..\modules\cctbx_project\libtbx\configure.py", line 29, in run libtbx.env_config.cold_start(sys.argv) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 2630, in cold_start env.refresh() File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 1849, in refresh module.process_command_line_directories() File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 2170, in process_command_line_directories scan_for_libtbx_set_dispatcher_name=True) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 2067, in write_dispatcher try: import IPython File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\__init__.py", line 49, in from .terminal.embed import embed File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\terminal\embed.py", line 17, in from IPython.core.interactiveshell import DummyMod, InteractiveShell File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\core\interactiveshell.py", line 199, in class InteractiveShell(SingletonConfigurable): File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\core\interactiveshell.py", line 261, in InteractiveShell help="Set the color scheme (NoColor, Neutral, Linux, or LightBG)." File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\traitlets\traitlets.py", line 2151, in __init__ values = [cast_unicode_py2(value) for value in values] File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\ipython_genutils\py3compat.py", line 26, in cast_unicode return decode(s, encoding) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\ipython_genutils\py3compat.py", line 17, in decode return s.decode(encoding, "replace") LookupError: unknown encoding: cp65001 Performing actions: base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=cctbx --install_conda --python=27 ===== Running in .: deleting dist, tests, tmp removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules, walk? True removed 2 files ===== Running in .: base ===== Running in build: run configure.py Process failed with return code 1 19/08/2020 12:12:16.98 C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. Python: 2.7.15 "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\python.exe" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: True Use opt_resources if available: False Use environment flags: False Enable C++11: False command_version_suffix: None Relocatable paths anchored at: c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build Top-down list of all modules involved: wxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\wxtbx" gltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\gltbx" crys3d "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\crys3d" cctbx_website "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx_website" mmtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\mmtbx" iotbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\iotbx" dxtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\dxtbx" cbflib+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cbflib" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cbflib_adaptbx" ccp4io+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\ccp4io_adaptbx" smtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\smtbx" ucif "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\ucif" cctbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\cctbx" scitbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\scitbx" fable "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\fable" omptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\omptbx" boost+adaptbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\boost" "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\boost_adaptbx" tbxx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\tbxx" chiltbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\chiltbx" libtbx "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx" Creating files in build directory: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\build" dispatcher_include_template.bat setpaths.bat setpaths_all.bat setpaths_debug.bat unsetpaths.bat SConstruct Processing: "c:\users\phaserbuilder\nightlybuilds\cctbxvc2008\x64\current\modules\cctbx_project\libtbx\command_line" Traceback (most recent call last): File "..\modules\cctbx_project\libtbx\configure.py", line 34, in if not run(): File "..\modules\cctbx_project\libtbx\configure.py", line 29, in run libtbx.env_config.cold_start(sys.argv) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 2630, in cold_start env.refresh() File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 1849, in refresh module.process_command_line_directories() File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 2170, in process_command_line_directories scan_for_libtbx_set_dispatcher_name=True) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules\cctbx_project\libtbx\env_config.py", line 2067, in write_dispatcher try: import IPython File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\__init__.py", line 49, in from .terminal.embed import embed File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\terminal\embed.py", line 17, in from IPython.core.interactiveshell import DummyMod, InteractiveShell File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\core\interactiveshell.py", line 199, in class InteractiveShell(SingletonConfigurable): File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\IPython\core\interactiveshell.py", line 261, in InteractiveShell help="Set the color scheme (NoColor, Neutral, Linux, or LightBG)." File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\traitlets\traitlets.py", line 2151, in __init__ values = [cast_unicode_py2(value) for value in values] File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\ipython_genutils\py3compat.py", line 26, in cast_unicode return decode(s, encoding) File "C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\conda_base\lib\site-packages\ipython_genutils\py3compat.py", line 17, in decode return s.decode(encoding, "replace") LookupError: unknown encoding: cp65001 Performing actions: build ===== Running in .: deleting dist, tests, tmp removing .pyc files in C:\Users\phaserbuilder\NightlyBuilds\CCTBXVC2008\x64\Current\modules, walk? True removed 2 files ===== Running in build: run configure.py Process failed with return code 1 19/08/2020 12:17:15.43