19/03/2020 6:00:01.82 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 93605 100 93605 0 0 93605 0 0:00:01 --:--:-- 0:00:01 225k 19/03/2020 6:00:02.43 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_base_packages.py --python-shared --all --phenix --labelit --dials --xia2 --nproc=20 --skip-if-exists ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:fqu3op_annlib.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:fqu3op_annlib.tar.gz ===== Running in modules: delete remote temporary archive of annlib ===== Running in modules: extracting archive files to annlib ===== Running in modules: delete local temporary archive of annlib Existing non-git directory -- don't know what to do. skipping: scons ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:2axeh6_ccp4io.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:2axeh6_ccp4io.tar.gz ===== Running in modules: delete remote temporary archive of ccp4io ===== Running in modules: extracting archive files to ccp4io ===== Running in modules: delete local temporary archive of ccp4io ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:vgnz49_eigen.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:vgnz49_eigen.tar.gz ===== Running in modules: delete remote temporary archive of eigen ===== Running in modules: extracting archive files to eigen ===== Running in modules: delete local temporary archive of eigen ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials 692a33f24..5c07aa8cc master -> origin/master * [new branch] autoupdate -> origin/autoupdate a8fa4daf2..149a0d508 debugging-integrate-memory-use -> origin/debugging-integrate-memory-use * [new branch] installer -> origin/installer * [new branch] sigma-b-multiplier-default -> origin/sigma-b-multiplier-default * [new branch] zero-weight-refl -> origin/zero-weight-refl Updating 692a33f24..5c07aa8cc Fast-forward algorithms/refinement/reflection_manager.py | 9 +- algorithms/scaling/active_parameter_managers.py | 171 +++++++++- .../scaling/model/components/scale_components.py | 110 ++++++- algorithms/scaling/model/model.py | 362 ++++++++++++++++++--- algorithms/scaling/observers.py | 8 +- algorithms/scaling/parameter_handler.py | 4 +- algorithms/scaling/plots.py | 242 ++++++++++---- algorithms/scaling/scaler.py | 23 +- algorithms/scaling/scaling_refiner.py | 10 +- algorithms/scaling/test_basis_function.py | 4 +- algorithms/scaling/test_model.py | 37 +++ algorithms/scaling/test_param_manager.py | 66 +++- algorithms/scaling/test_scale.py | 21 ++ algorithms/scaling/test_scale_components.py | 4 +- algorithms/scaling/test_scaler.py | 6 +- algorithms/scaling/test_target_function.py | 10 +- libtbx_refresh.py | 1 + newsfragments/1183.newsfragment | 1 + report/plots.py | 56 +++- report/test_plots.py | 2 + util/image_viewer/slip_viewer/uc_frame.py | 15 +- 21 files changed, 1009 insertions(+), 153 deletions(-) create mode 100644 newsfragments/1183.newsfragment Current branch master is up to date. Updating 'probe': At revision 103. Updating 'reduce': At revision 317. Already up to date. Current branch master is up to date. Already up to date. Current branch master is up to date. svn: E155004: Run 'svn cleanup' to remove locks (type 'svn help cleanup' for details) svn: E155004: Working copy 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' locked. svn: E155004: 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' is already locked. ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert ===== Running in modules\dxtbx: git pull --rebase ===== Running in modules\amber_library: git pull --rebase ===== Running in modules: svn update ccp4io_adaptbx --non-interactive --trust-server-cert Process failed with return code 1