21/03/2020 6:00:02.53 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 93605 100 93605 0 0 93605 0 0:00:01 --:--:-- 0:00:01 167k 21/03/2020 6:00:06.86 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_base_packages.py --python-shared --all --phenix --labelit --dials --xia2 --nproc=20 --skip-if-exists ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:ovvujj_annlib.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:ovvujj_annlib.tar.gz ===== Running in modules: delete remote temporary archive of annlib ===== Running in modules: extracting archive files to annlib ===== Running in modules: delete local temporary archive of annlib Existing non-git directory -- don't know what to do. skipping: scons ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:lwph3b_ccp4io.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:lwph3b_ccp4io.tar.gz ===== Running in modules: delete remote temporary archive of ccp4io ===== Running in modules: extracting archive files to ccp4io ===== Running in modules: delete local temporary archive of ccp4io ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:vdmwfi_eigen.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:vdmwfi_eigen.tar.gz ===== Running in modules: delete remote temporary archive of eigen ===== Running in modules: extracting archive files to eigen ===== Running in modules: delete local temporary archive of eigen ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials 5c24eec6c..33b765d7b master -> origin/master b51bf7ab5..02ca58f5f sigma-b-multiplier-default -> origin/sigma-b-multiplier-default Updating 5c24eec6c..33b765d7b Fast-forward util/image_viewer/mask_frame.py | 95 ++++++-------- util/image_viewer/slip_viewer/frame.py | 100 +++++---------- util/image_viewer/slip_viewer/ring_frame.py | 26 ++-- util/image_viewer/slip_viewer/rotate_detector.py | 29 +++++ util/image_viewer/slip_viewer/tile_generation.py | 157 ++++++----------------- util/image_viewer/slip_viewer/uc_frame.py | 10 +- util/image_viewer/spotfinder_frame.py | 138 ++++++++------------ 7 files changed, 206 insertions(+), 349 deletions(-) create mode 100644 util/image_viewer/slip_viewer/rotate_detector.py Current branch master is up to date. Updating 'probe': At revision 103. Updating 'reduce': At revision 317. From https://github.com/cctbx/dxtbx * [new branch] best-cell -> origin/best-cell Already up to date. Current branch master is up to date. From https://github.com/phenix-project/amber_library 9570a57..4525f21 master -> origin/master Updating 9570a57..4525f21 Fast-forward s/SO4.frcmod | 12 ++++++++++++ s/SO4.mol2 | 20 ++++++++++++++++++++ u/URE.frcmod | 21 +++++++++++++++++++++ u/URE.mol2 | 30 ++++++++++++++++++++++++++++++ 4 files changed, 83 insertions(+) create mode 100644 s/SO4.frcmod create mode 100644 s/SO4.mol2 create mode 100644 u/URE.frcmod create mode 100644 u/URE.mol2 Current branch master is up to date. svn: E155004: Run 'svn cleanup' to remove locks (type 'svn help cleanup' for details) svn: E155004: Working copy 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' locked. svn: E155004: 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' is already locked. ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert ===== Running in modules\dxtbx: git pull --rebase ===== Running in modules\amber_library: git pull --rebase ===== Running in modules: svn update ccp4io_adaptbx --non-interactive --trust-server-cert Process failed with return code 1