25/03/2020 6:00:04.60 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 93605 100 93605 0 0 93605 0 0:00:01 --:--:-- 0:00:01 390k 25/03/2020 6:00:07.58 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_base_packages.py --python-shared --all --phenix --labelit --dials --xia2 --nproc=20 --skip-if-exists ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:klty8x_annlib.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:klty8x_annlib.tar.gz ===== Running in modules: delete remote temporary archive of annlib ===== Running in modules: extracting archive files to annlib ===== Running in modules: delete local temporary archive of annlib Existing non-git directory -- don't know what to do. skipping: scons ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:1tcucs_ccp4io.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:1tcucs_ccp4io.tar.gz ===== Running in modules: delete remote temporary archive of ccp4io ===== Running in modules: extracting archive files to ccp4io ===== Running in modules: delete local temporary archive of ccp4io ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:scu2k0_eigen.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:scu2k0_eigen.tar.gz ===== Running in modules: delete remote temporary archive of eigen ===== Running in modules: extracting archive files to eigen ===== Running in modules: delete local temporary archive of eigen ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials 4475da225..adc74ed39 master -> origin/master fdf98e000..4b6ad662c dials-next -> origin/dials-next * [new branch] dials-report-html -> origin/dials-report-html * [new branch] no-trusted-range-for-spotfinding -> origin/no-trusted-range-for-spotfinding * [new branch] panel_mask -> origin/panel_mask f278fabe7..8bcba7735 unit-cell-tool -> origin/unit-cell-tool * [new branch] update-contrib -> origin/update-contrib Updating 4475da225..adc74ed39 Fast-forward algorithms/scaling/active_parameter_managers.py | 4 +-- algorithms/scaling/scaler.py | 1 - algorithms/scaling/test_scale.py | 4 +-- command_line/generate_tutorial_text.py | 2 +- command_line/image_viewer.py | 38 +++++++++++++++++++++- command_line/scale.py | 4 +-- .../multi_crystal_symmetry_and_scaling.rst | 2 +- .../tutorials/multi_lattice_tutorial.rst | 4 +-- .../processing_in_detail_betalactamase.rst | 2 +- installer/bootstrap.py | 7 ++-- newsfragments/1192.feature | 1 + test/command_line/test_export.py | 27 ++++++++------- util/export_mmcif.py | 14 ++++---- util/image_viewer/slip_viewer/uc_frame.py | 23 +++++++++---- 14 files changed, 93 insertions(+), 40 deletions(-) create mode 100644 newsfragments/1192.feature Current branch master is up to date. Updating 'probe': At revision 103. Updating 'reduce': At revision 317. From https://github.com/cctbx/dxtbx * [new branch] recalc-cell -> origin/recalc-cell Already up to date. Current branch master is up to date. Already up to date. Current branch master is up to date. svn: E155004: Run 'svn cleanup' to remove locks (type 'svn help cleanup' for details) svn: E155004: Working copy 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' locked. svn: E155004: 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' is already locked. ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert ===== Running in modules\dxtbx: git pull --rebase ===== Running in modules\amber_library: git pull --rebase ===== Running in modules: svn update ccp4io_adaptbx --non-interactive --trust-server-cert Process failed with return code 1