31/03/2020 6:00:01.86 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 19 93605 19 18236 0 0 18236 0 0:00:05 --:--:-- 0:00:05 44805 100 93605 100 93605 0 0 93605 0 0:00:01 --:--:-- 0:00:01 224k 31/03/2020 6:00:02.43 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_base_packages.py --python-shared --all --phenix --labelit --dials --xia2 --nproc=20 --skip-if-exists ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:bwdg22_annlib.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:bwdg22_annlib.tar.gz ===== Running in modules: delete remote temporary archive of annlib ===== Running in modules: extracting archive files to annlib ===== Running in modules: delete local temporary archive of annlib Existing non-git directory -- don't know what to do. skipping: scons ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:7a91ri_ccp4io.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:7a91ri_ccp4io.tar.gz ===== Running in modules: delete remote temporary archive of ccp4io ===== Running in modules: extracting archive files to ccp4io ===== Running in modules: delete local temporary archive of ccp4io ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:omivum_eigen.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:omivum_eigen.tar.gz ===== Running in modules: delete remote temporary archive of eigen ===== Running in modules: extracting archive files to eigen ===== Running in modules: delete local temporary archive of eigen ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials 78f1e7499..4997a0fd0 master -> origin/master fdf98e000..80a7d01a4 dials-2.2 -> origin/dials-2.2 df05d8e96..b16749e88 dials-next -> origin/dials-next Updating 78f1e7499..4997a0fd0 Fast-forward newsfragments/1213.feature | 1 + util/image_viewer/spotfinder_frame.py | 42 +++++++++++++++++++++++------------ 2 files changed, 29 insertions(+), 14 deletions(-) create mode 100644 newsfragments/1213.feature Current branch master is up to date. Updating 'probe': At revision 103. Updating 'reduce': At revision 317. From https://github.com/cctbx/dxtbx 408b0b1..2fc0686 master -> origin/master Updating 408b0b1..2fc0686 Fast-forward model/__init__.py | 45 +++++++- model/boost_python/crystal.cc | 80 +++++++++++-- model/crystal.h | 145 +++++++++++++++++++----- newsfragments/142.feature | 1 + tests/model/test_crystal_model.py | 51 ++++++++- tests/model/test_experiment_list.py | 63 +++++----- tests/serialize/test_crystal_model_serialize.py | 32 +++++- tests/serialize/test_filename.py | 8 +- 8 files changed, 354 insertions(+), 71 deletions(-) create mode 100644 newsfragments/142.feature Current branch master is up to date. From https://github.com/phenix-project/amber_library 4525f21..f0f6012 master -> origin/master Updating 4525f21..f0f6012 Fast-forward c/CIT.frcmod | 13 +++++++++++++ c/CIT.mol2 | 46 ++++++++++++++++++++++++++++++++++++++++++++++ g/GOL.frcmod | 12 ++++++++++++ g/GOL.mol2 | 38 ++++++++++++++++++++++++++++++++++++++ 4 files changed, 109 insertions(+) create mode 100644 c/CIT.frcmod create mode 100644 c/CIT.mol2 create mode 100644 g/GOL.frcmod create mode 100644 g/GOL.mol2 Current branch master is up to date. svn: E155004: Run 'svn cleanup' to remove locks (type 'svn help cleanup' for details) svn: E155004: Working copy 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' locked. svn: E155004: 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' is already locked. ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert ===== Running in modules\dxtbx: git pull --rebase ===== Running in modules\amber_library: git pull --rebase ===== Running in modules: svn update ccp4io_adaptbx --non-interactive --trust-server-cert Process failed with return code 1