09/04/2020 6:00:02.38 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 7 93605 7 7387 0 0 7387 0 0:00:12 --:--:-- 0:00:12 18194 100 93605 100 93605 0 0 93605 0 0:00:01 --:--:-- 0:00:01 225k 09/04/2020 6:00:03.41 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_base_packages.py --python-shared --all --phenix --labelit --dials --xia2 --nproc=20 --skip-if-exists ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:x6va7a_annlib.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:x6va7a_annlib.tar.gz ===== Running in modules: delete remote temporary archive of annlib ===== Running in modules: extracting archive files to annlib ===== Running in modules: delete local temporary archive of annlib Existing non-git directory -- don't know what to do. skipping: scons ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:csqhp4_ccp4io.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:csqhp4_ccp4io.tar.gz ===== Running in modules: delete remote temporary archive of ccp4io ===== Running in modules: extracting archive files to ccp4io ===== Running in modules: delete local temporary archive of ccp4io ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:lney56_eigen.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:lney56_eigen.tar.gz ===== Running in modules: delete remote temporary archive of eigen ===== Running in modules: extracting archive files to eigen ===== Running in modules: delete local temporary archive of eigen ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials cefb0d330..39597c85c master -> origin/master 933f6b716..12397b175 1217 -> origin/1217 0e9ef4bd1..78890f8ed ttr-recalc-cell -> origin/ttr-recalc-cell Updating cefb0d330..39597c85c Fast-forward CONTRIBUTING.md | 23 +++++++++--------- command_line/generate_tutorial_text.py | 4 ++-- command_line/make_sphinx_html.py | 2 +- command_line/report.py | 2 +- .../processing_in_detail_betalactamase.rst | 2 +- doc/sphinx/publications.rst | 1 + newsfragments/1206.feature | 1 + test/command_line/test_report.py | 4 ++-- util/image_viewer/spotfinder_frame.py | 28 +--------------------- 9 files changed, 21 insertions(+), 46 deletions(-) create mode 100644 newsfragments/1206.feature Current branch master is up to date. Updating 'probe': At revision 103. Updating 'reduce': At revision 317. From https://github.com/cctbx/dxtbx * [new branch] spectrum_beam2 -> origin/spectrum_beam2 Already up to date. Current branch master is up to date. Already up to date. Current branch master is up to date. svn: E155004: Run 'svn cleanup' to remove locks (type 'svn help cleanup' for details) svn: E155004: Working copy 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' locked. svn: E155004: 'C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current\modules\ccp4io_adaptbx' is already locked. ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert ===== Running in modules\dxtbx: git pull --rebase ===== Running in modules\amber_library: git pull --rebase ===== Running in modules: svn update ccp4io_adaptbx --non-interactive --trust-server-cert Process failed with return code 1