08/07/2020 6:00:01.71 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 99218 100 99218 0 0 99218 0 0:00:01 --:--:-- 0:00:01 200k 08/07/2020 6:00:02.38 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build ******************************************************************************* An environment containing git-lfs and/or svn will be installed during the "base" step. Pleaser re-run the "update" step after "base" completes, so that git-lfs files for phenix_regression will be downloaded. ******************************************************************************* ******************************************************************************* An environment containing git-lfs and/or svn will be installed during the "base" step. Pleaser re-run the "update" step after "base" completes, so that git-lfs files for phenix_examples will be downloaded. ******************************************************************************* Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:baduj9_annlib.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:baduj9_annlib.tar.gz ===== Running in modules: delete remote temporary archive of annlib ===== Running in modules: extracting archive files to annlib ===== Running in modules: delete local temporary archive of annlib Existing non-git directory -- don't know what to do. skipping: scons ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:jjrziu_ccp4io.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:jjrziu_ccp4io.tar.gz ===== Running in modules: delete remote temporary archive of ccp4io ===== Running in modules: extracting archive files to ccp4io ===== Running in modules: delete local temporary archive of ccp4io ===== Running in modules: create remote temporary archive builder@cci.lbl.gov:nn4qaz_eigen.tar.gz ===== Running in modules: getting remote file builder@cci.lbl.gov:nn4qaz_eigen.tar.gz ===== Running in modules: delete remote temporary archive of eigen ===== Running in modules: extracting archive files to eigen ===== Running in modules: delete local temporary archive of eigen ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials cf0306831..2ad753148 master -> origin/master + c5d1c3486...5a98821eb python3738 -> origin/python3738 (forced update) * [new branch] tqdm -> origin/tqdm Updating cf0306831..2ad753148 Fast-forward .azure-pipelines/azure-pipelines-mac.yml | 4 +- algorithms/integration/integrator.py | 80 +++++++++++++------------------- algorithms/integration/processor.py | 2 +- algorithms/integration/report.py | 2 +- algorithms/scaling/scaler.py | 3 +- algorithms/symmetry/cosym/__init__.py | 13 ++++-- newsfragments/1319.feature | 1 + newsfragments/1325.misc | 1 + 8 files changed, 49 insertions(+), 57 deletions(-) create mode 100644 newsfragments/1319.feature create mode 100644 newsfragments/1325.misc Current branch master is up to date. Updating 'probe': At revision 103. Updating 'reduce': At revision 317. From https://github.com/cctbx/dxtbx 007818b..2a6b0d3 master -> origin/master fd94a63..2d13f17 detector-housekeeping -> origin/detector-housekeeping Updating 007818b..2a6b0d3 Fast-forward format/FormatHDF5EigerNearlyNexus.py | 6 ++ format/FormatNexusEiger.py | 38 ++++++++ format/FormatNexusEigerDLS.py | 107 +++++++++++++++++++++ format/FormatNexusEigerDLS16M.py | 61 +----------- format/nexus.py | 48 +++++---- newsfragments/180.bugfix | 1 + ...est_FormatNexus.py => test_FormatNexusEiger.py} | 6 +- tests/format/test_FormatNexusEigerDLS16M.py | 41 ++++++++ 8 files changed, 226 insertions(+), 82 deletions(-) create mode 100644 format/FormatNexusEiger.py create mode 100644 format/FormatNexusEigerDLS.py create mode 100644 newsfragments/180.bugfix rename tests/format/{test_FormatNexus.py => test_FormatNexusEiger.py} (90%) Current branch master is up to date. Already up to date. Current branch master is up to date. Updating 'ccp4io_adaptbx': At revision 143. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert ===== Running in modules\dxtbx: git pull --rebase ===== Running in modules\amber_library: git pull --rebase ===== Running in modules: svn update ccp4io_adaptbx --non-interactive --trust-server-cert ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1