28/08/2020 6:00:05.98 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 98629 100 98629 0 0 98629 0 0:00:01 --:--:-- 0:00:01 307k 28/08/2020 6:00:12.23 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build ******************************************************************************* An environment containing git-lfs and/or svn will be installed during the "base" step. Pleaser re-run the "update" step after "base" completes, so that git-lfs files for phenix_regression will be downloaded. ******************************************************************************* ******************************************************************************* An environment containing git-lfs and/or svn will be installed during the "base" step. Pleaser re-run the "update" step after "base" completes, so that git-lfs files for phenix_examples will be downloaded. ******************************************************************************* Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: annlib Existing non-git directory -- don't know what to do. skipping: scons Existing non-git directory -- don't know what to do. skipping: ccp4io Existing non-git directory -- don't know what to do. skipping: eigen ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials 5a7f9c215..9bc7b6f5a master -> origin/master + 053e026cf...a1846c4a2 delta_cc_half_sigma -> origin/delta_cc_half_sigma (forced update) Updating 5a7f9c215..9bc7b6f5a Fast-forward algorithms/scaling/algorithm.py | 234 +++--- algorithms/scaling/combine_intensities.py | 13 +- .../scaling/cross_validation/crossvalidator.py | 2 - algorithms/scaling/observers.py | 785 +++++++++------------ algorithms/scaling/scaling_options.py | 1 + algorithms/scaling/test_observers.py | 388 ++-------- algorithms/scaling/test_scale.py | 5 +- command_line/cosym.py | 22 +- command_line/scale.py | 12 - command_line/symmetry.py | 36 +- newsfragments/1375.misc | 1 + newsfragments/1381.misc | 1 + newsfragments/1383.bugfix | 1 + precommitbx/installer.py | 4 +- test/command_line/test_symmetry.py | 51 ++ util/slice.py | 5 +- util/test_slice.py | 4 - 17 files changed, 649 insertions(+), 916 deletions(-) create mode 100644 newsfragments/1375.misc create mode 100644 newsfragments/1381.misc create mode 100644 newsfragments/1383.bugfix Current branch master is up to date. Updating 'probe': At revision 103. Updating 'reduce': At revision 318. From https://github.com/cctbx/dxtbx 3fad1e5..a39973c master -> origin/master * [new branch] filepath_percent_char -> origin/filepath_percent_char + ebe510a...8165e80 mpi_average_fixes -> origin/mpi_average_fixes (forced update) Updating 3fad1e5..a39973c Fast-forward datablock.py | 6 ------ format/Format.py | 1 - format/FormatMultiImage.py | 1 - format/FormatXTCJungfrau.py | 4 ++-- imageset.py | 3 --- model/__init__.py | 1 - model/beam.py | 1 - model/detector.py | 2 -- model/experiment_list.py | 6 ------ model/goniometer.py | 2 -- model/scan.py | 1 - sequence_filenames.py | 1 - serialize/dump.py | 1 - serialize/imageset.py | 4 ---- serialize/xds.py | 1 - tests/model/test_experiment_list.py | 1 - 16 files changed, 2 insertions(+), 34 deletions(-) Current branch master is up to date. Already up to date. Current branch master is up to date. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert ===== Running in modules\dxtbx: git pull --rebase ===== Running in modules\amber_library: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1