01/11/2020 6:00:01.69 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 97k 100 97k 0 0 97k 0 0:00:01 --:--:-- 0:00:01 298k 01/11/2020 6:00:02.22 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build ******************************************************************************* An environment containing git-lfs and/or svn will be installed during the "base" step. Pleaser re-run the "update" step after "base" completes, so that git-lfs files for phenix_regression will be downloaded. ******************************************************************************* ******************************************************************************* An environment containing git-lfs and/or svn will be installed during the "base" step. Pleaser re-run the "update" step after "base" completes, so that git-lfs files for phenix_examples will be downloaded. ******************************************************************************* Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: scons ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials c673fc250..b2ad3d694 master -> origin/master + c9ce6d27c...e67ea1d04 python-development-mode -> origin/python-development-mode (forced update) Already up to date. Current branch dials-2.2 is up to date. Your branch is up to date with 'origin/dials-2.2'. Already on 'dials-2.2' Branch 'dials-2.2' set up to track remote branch 'dials-2.2' from 'origin'. Updating 'probe': At revision 103. Updating 'reduce': At revision 349. From https://github.com/phenix-project/phenix_dev_doc 90a7904..8f6d7f6 master -> origin/master Updating 90a7904..8f6d7f6 Fast-forward html_files/{doc_fit_ligand.html => doc_mb_fit_ligand.html} | 14 +++----------- ...{doc_model_building_2.html => doc_mb_loop_fitting.html} | 14 +++----------- ...oc_model_building_1.html => doc_mb_model_building.html} | 14 +++----------- ...c_model_building_morphing.html => doc_mb_morphing.html} | 13 +++---------- ...del_building_read_files.html => doc_mb_read_files.html} | 11 ++--------- ...c_model_building_3.html => doc_mb_replace_segment.html} | 13 +++---------- ...c_model_building_sequence.html => doc_mb_sequence.html} | 14 +++----------- html_files/doc_quick_reference.html | 11 ++--------- .../{tst_doc_fit_ligand.py => tst_doc_mb_fit_ligand.py} | 2 +- ..._doc_model_building_2.py => tst_doc_mb_loop_fitting.py} | 2 +- ...oc_model_building_1.py => tst_doc_mb_model_building.py} | 2 +- ...c_model_building_morphing.py => tst_doc_mb_morphing.py} | 2 +- ...del_building_read_files.py => tst_doc_mb_read_files.py} | 2 +- ...c_model_building_3.py => tst_doc_mb_replace_segment.py} | 2 +- ...c_model_building_sequence.py => tst_doc_mb_sequence.py} | 2 +- run_tests.py | 14 +++++++------- 16 files changed, 36 insertions(+), 96 deletions(-) rename html_files/{doc_fit_ligand.html => doc_mb_fit_ligand.html} (95%) rename html_files/{doc_model_building_2.html => doc_mb_loop_fitting.html} (94%) rename html_files/{doc_model_building_1.html => doc_mb_model_building.html} (96%) rename html_files/{doc_model_building_morphing.html => doc_mb_morphing.html} (97%) rename html_files/{doc_model_building_read_files.html => doc_mb_read_files.html} (97%) rename html_files/{doc_model_building_3.html => doc_mb_replace_segment.html} (96%) rename html_files/{doc_model_building_sequence.html => doc_mb_sequence.html} (94%) rename regression/{tst_doc_fit_ligand.py => tst_doc_mb_fit_ligand.py} (81%) rename regression/{tst_doc_model_building_2.py => tst_doc_mb_loop_fitting.py} (80%) rename regression/{tst_doc_model_building_1.py => tst_doc_mb_model_building.py} (80%) rename regression/{tst_doc_model_building_morphing.py => tst_doc_mb_morphing.py} (79%) rename regression/{tst_doc_model_building_read_files.py => tst_doc_mb_read_files.py} (78%) rename regression/{tst_doc_model_building_3.py => tst_doc_mb_replace_segment.py} (80%) rename regression/{tst_doc_model_building_sequence.py => tst_doc_mb_sequence.py} (79%) Current branch master is up to date. Already up to date. Current branch master is up to date. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules\dials: git checkout dials-2.2 ===== Running in modules\dials: git branch --set-upstream-to=origin/dials-2.2 dials-2.2 Existing non-git directory -- don't know what to do. skipping: eigen ===== Running in modules: svn update probe --non-interactive --trust-server-cert ===== Running in modules: svn update reduce --non-interactive --trust-server-cert Existing non-git directory -- don't know what to do. skipping: ccp4io ===== Running in modules\phenix_dev_doc: git pull --rebase ===== Running in modules\amber_library: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1