24/07/2021 6:00:02.16 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 101k 100 101k 0 0 101k 0 0:00:01 --:--:-- 0:00:01 223k 24/07/2021 6:00:02.76 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: scons ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials + 0711da4dd...1a5d1899a dials-3.5rc -> origin/dials-3.5rc (forced update) * [new branch] mpi_experiment -> origin/mpi_experiment beaacd062..8bfdfe42e scaling_absorption_model -> origin/scaling_absorption_model Already up to date. Your branch is up to date with 'origin/dials-2.2'. Already on 'dials-2.2' Branch 'dials-2.2' set up to track remote branch 'dials-2.2' from 'origin'. From https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/voyager_regression 3cde601..7ed8328 master -> origin/master Updating 3cde601..7ed8328 Fast-forward CASP_Rel_eLLG/R1030-D2/tst_casp_rel_ellg_1030.py | 11 +- CASP_Rel_eLLG/T1024-D1/T1024-D1.phil | 11 +- CASP_Rel_eLLG/T1024-D1/tst_casp_rel_ellg_1024.py | 39 +- CASP_Rel_eLLG/T1038-D2_bfact/test1038.phil | 8 +- .../T1038-D2_bfact/tst_casp_rel_ellg_1038.py | 45 +- Homologs/1qiv/SCULPTED/1qiv/1oOo4MVF-A.pdb | 850 --------------- Homologs/1qiv/SCULPTED/1qiv/2oOo4HEX-A.pdb | 1099 ------------------- Homologs/1qiv/SCULPTED/1qiv/3oOo3MWU-A.pdb | 759 ------------- Homologs/1qiv/SCULPTED/1qiv/4oOo7JTS-t.pdb | 705 ------------- Homologs/1qiv/SCULPTED/1qiv/5oOo6XYR-A.pdb | 1111 -------------------- Homologs/1qiv/tst_homologs_1qiv_hhpred.py | 48 + Homologs/1qiv/tst_homologs_1qiv_localfiles.py | 45 + Homologs/1qiv/tst_homologs_1qiv_noalign.py | 45 + Homologs/1qiv/voyager.log | 0 Homologs/1qiv/voyager_strategy.log | 229 ---- __pycache__/run_tests.cpython-37.pyc | Bin 0 -> 593 bytes run_tests.py | 18 +- voyager_strategy.log | 17 + 18 files changed, 258 insertions(+), 4782 deletions(-) delete mode 100644 Homologs/1qiv/SCULPTED/1qiv/1oOo4MVF-A.pdb delete mode 100644 Homologs/1qiv/SCULPTED/1qiv/2oOo4HEX-A.pdb delete mode 100644 Homologs/1qiv/SCULPTED/1qiv/3oOo3MWU-A.pdb delete mode 100644 Homologs/1qiv/SCULPTED/1qiv/4oOo7JTS-t.pdb delete mode 100644 Homologs/1qiv/SCULPTED/1qiv/5oOo6XYR-A.pdb create mode 100644 Homologs/1qiv/tst_homologs_1qiv_hhpred.py create mode 100644 Homologs/1qiv/tst_homologs_1qiv_localfiles.py create mode 100644 Homologs/1qiv/tst_homologs_1qiv_noalign.py delete mode 100644 Homologs/1qiv/voyager.log delete mode 100644 Homologs/1qiv/voyager_strategy.log create mode 100644 __pycache__/run_tests.cpython-37.pyc create mode 100644 voyager_strategy.log Updating 'probe': At revision 107. Already up to date. Already up to date. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules\dials: git checkout dials-2.2 ===== Running in modules\dials: git branch --set-upstream-to=origin/dials-2.2 dials-2.2 Existing non-git directory -- don't know what to do. skipping: eigen ===== Running in modules\voyager_regression: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert Existing non-git directory -- don't know what to do. skipping: reduce Existing non-git directory -- don't know what to do. skipping: ccp4io ===== Running in modules\phenix_dev_doc: git pull --rebase ===== Running in modules\amber_library: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1