31/07/2021 6:00:02.20 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 101k 100 101k 0 0 101k 0 0:00:01 --:--:-- 0:00:01 379k 31/07/2021 6:00:02.61 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: scons ===== Downloading https://gitcdn.xyz/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: 484 kB From https://github.com/dials/dials * [new branch] clumpy -> origin/clumpy + 3553ac685...e13779013 dials-3.5rc -> origin/dials-3.5rc (forced update) a827a659f..850fb80bc main -> origin/main d926d1627..f1030f454 sparse-scan-varying -> origin/sparse-scan-varying Already up to date. Your branch is up to date with 'origin/dials-2.2'. Already on 'dials-2.2' Branch 'dials-2.2' set up to track remote branch 'dials-2.2' from 'origin'. From https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/voyager_regression 360cffa..dcfa0f8 master -> origin/master 34a5c21..3055624 claudia_dev -> origin/claudia_dev Updating 360cffa..dcfa0f8 Fast-forward CASP_Rel_eLLG/R1030-D2/tst_casp_rel_ellg_1030.py | 45 +- CASP_Rel_eLLG/T1024-D1/tst_casp_rel_ellg_1024.py | 17 +- .../T1038-D2_bfact/tst_casp_rel_ellg_1038.py | 18 +- Homologs/1qiv/tst_homologs_1qiv_hhpred.py | 38 +- Homologs/1qiv/tst_homologs_1qiv_localfiles.py | 40 +- Homologs/1qiv/tst_homologs_1qiv_noalign.py | 38 +- Isostructure/1qiv/1qiv.phil | 7 - Isostructure/1qiv/ISOSTRUCTURE/1qiv.pdb | 2590 ---- Isostructure/1qiv/tst_1qiv_isostructure.py | 67 + Isostructure/1qiv/voyager.log | 0 Isostructure/1qiv/voyager_strategy.log | 32 - Isostructure/2f6f/tst_2f6f_isostructure.py | 68 + Isostructure/2f6f/voyager.log | 0 Isostructure/2f6f/voyager_strategy.log | 20 - Isostructure/2trh/isostructure_2trh.phil | 5 - Isostructure/2trh/tst_2trh_isostructure.py | 68 + Isostructure/2trh/voyager.log | 0 Isostructure/2trh/voyager_strategy.log | 22 - Isostructure/3mwo/tst_3mwo_isostructure.py | 67 + .../beta_blip/tst_betablip_sculptor_ensembler.py | 86 + Xtricorder/2cc0/tst_2cc0_xtricorder.py | 66 + Xtricorder/2cc0/voyager_strategy.log | 1655 --- Xtricorder/2pan/tst_2pan_xtricorder.py | 67 + .../state_0/Hall__P_2ac_2ab__x-y-z_.mtz | Bin 7878584 -> 0 bytes Xtricorder/2qss/log_before_test_reset | 12428 ------------------- Xtricorder/2qss/xtricorder_2qss_testing.phil | 13 - .../state_0/Hall__P_2_2ab__x-y-z_.mtz | Bin 2765540 -> 0 bytes .../state_1/Hall__P_2_2ab__x-y-z_.mtz | Bin 2765300 -> 0 bytes Xtricorder/2trh/log_before_test_reset | 3299 ----- Xtricorder/2trh/tst_2trh_xtricorder.py | 66 + Xtricorder/5cz4/README_5cz4 | 1 - Xtricorder/5cz4/tst_5cz4_xtricorder.py | 67 + Xtricorder/5tin/xtricorder.phil | 9 - run_tests.py | 17 +- voyager_strategy.log | 17 - 35 files changed, 803 insertions(+), 20130 deletions(-) delete mode 100644 Isostructure/1qiv/ISOSTRUCTURE/1qiv.pdb create mode 100644 Isostructure/1qiv/tst_1qiv_isostructure.py delete mode 100644 Isostructure/1qiv/voyager.log delete mode 100644 Isostructure/1qiv/voyager_strategy.log create mode 100644 Isostructure/2f6f/tst_2f6f_isostructure.py delete mode 100644 Isostructure/2f6f/voyager.log delete mode 100644 Isostructure/2f6f/voyager_strategy.log create mode 100644 Isostructure/2trh/tst_2trh_isostructure.py delete mode 100644 Isostructure/2trh/voyager.log delete mode 100644 Isostructure/2trh/voyager_strategy.log create mode 100644 Isostructure/3mwo/tst_3mwo_isostructure.py create mode 100644 Sculptor_Ensembler/beta_blip/tst_betablip_sculptor_ensembler.py create mode 100644 Xtricorder/2cc0/tst_2cc0_xtricorder.py delete mode 100644 Xtricorder/2cc0/voyager_strategy.log create mode 100644 Xtricorder/2pan/tst_2pan_xtricorder.py delete mode 100644 Xtricorder/2qss/XTRICORDER_BEFORE_RESET/state_0/Hall__P_2ac_2ab__x-y-z_.mtz delete mode 100644 Xtricorder/2qss/log_before_test_reset delete mode 100644 Xtricorder/2qss/xtricorder_2qss_testing.phil delete mode 100644 Xtricorder/2trh/XTRICORDER_BEFORE_RESET/state_0/Hall__P_2_2ab__x-y-z_.mtz delete mode 100644 Xtricorder/2trh/XTRICORDER_BEFORE_RESET/state_1/Hall__P_2_2ab__x-y-z_.mtz delete mode 100644 Xtricorder/2trh/log_before_test_reset create mode 100644 Xtricorder/2trh/tst_2trh_xtricorder.py delete mode 100644 Xtricorder/5cz4/README_5cz4 create mode 100644 Xtricorder/5cz4/tst_5cz4_xtricorder.py delete mode 100644 Xtricorder/5tin/xtricorder.phil delete mode 100644 voyager_strategy.log Updating 'probe': At revision 107. Already up to date. Already up to date. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules\dials: git checkout dials-2.2 ===== Running in modules\dials: git branch --set-upstream-to=origin/dials-2.2 dials-2.2 Existing non-git directory -- don't know what to do. skipping: eigen ===== Running in modules\voyager_regression: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert Existing non-git directory -- don't know what to do. skipping: reduce Existing non-git directory -- don't know what to do. skipping: ccp4io ===== Running in modules\phenix_dev_doc: git pull --rebase ===== Running in modules\amber_library: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1