08/02/2022 6:00:01.66 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 6 102k 6 6855 0 0 14099 0 0:00:07 --:--:-- 0:00:07 14104 100 102k 100 102k 0 0 208k 0 --:--:-- --:--:-- --:--:-- 208k 08/02/2022 6:00:02.49 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. From https://github.com/dials/dials 0a6683e2e..5b871c0ec dials-3.8 -> origin/dials-3.8 + 865370e19...efda195e3 dials-3.8rc -> origin/dials-3.8rc (forced update) b36cd209e..79f992d4a dials-next -> origin/dials-next 42cc17686..d7eb18ee1 main -> origin/main ab738a223..c6b8fffed ssx_integrate -> origin/ssx_integrate * [new tag] v3.8.2 -> v3.8.2 Already up to date. Your branch is up to date with 'origin/dials-2.2'. Already on 'dials-2.2' Branch 'dials-2.2' set up to track remote branch 'dials-2.2' from 'origin'. From https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/voyager_regression 12f5c90..266fbf0 master -> origin/master Updating 12f5c90..266fbf0 Fast-forward EM-placement/data/emd_30627.map | Bin 11944960 -> 0 bytes EM-placement/data/emd_30627_half_map_1.map | Bin 11944960 -> 0 bytes EM-placement/data/emd_30627_half_map_2.map | Bin 11944960 -> 0 bytes EM-placement/fitted_model/7db6.cif | 13064 ------------------- EM-placement/fitted_model/7db6.pdb | 9575 -------------- EM-placement/fitted_model/7db6_A.pdb | 1780 --- EM-placement/fitted_model/7db6_B.pdb | 2616 ---- EM-placement/fitted_model/7db6_C.pdb | 411 - EM-placement/fitted_model/7db6_D.pdb | 2211 ---- EM-placement/fitted_model/7db6_E.pdb | 1806 --- EM-placement/fitted_model/7db6_a.fasta | 8 - EM-placement/fitted_model/7db6_b.fasta | 8 - EM-placement/fitted_model/7db6_c.fasta | 4 - EM-placement/fitted_model/7db6_d.fasta | 2 - EM-placement/fitted_model/7db6_e.fasta | 6 - EM-placement/fitted_model/rcsb_pdb_7DB6.fasta | 10 - EM-placement/log_with_master_code | 5264 -------- EM-placement/output_table_docking_master_code | 2 - ...est_melatonin_receptor_D_subunit_subsphere.phil | 40 - 19 files changed, 36807 deletions(-) delete mode 100644 EM-placement/data/emd_30627.map delete mode 100644 EM-placement/data/emd_30627_half_map_1.map delete mode 100644 EM-placement/data/emd_30627_half_map_2.map delete mode 100644 EM-placement/fitted_model/7db6.cif delete mode 100644 EM-placement/fitted_model/7db6.pdb delete mode 100644 EM-placement/fitted_model/7db6_A.pdb delete mode 100644 EM-placement/fitted_model/7db6_B.pdb delete mode 100644 EM-placement/fitted_model/7db6_C.pdb delete mode 100644 EM-placement/fitted_model/7db6_D.pdb delete mode 100644 EM-placement/fitted_model/7db6_E.pdb delete mode 100644 EM-placement/fitted_model/7db6_a.fasta delete mode 100644 EM-placement/fitted_model/7db6_b.fasta delete mode 100644 EM-placement/fitted_model/7db6_c.fasta delete mode 100644 EM-placement/fitted_model/7db6_d.fasta delete mode 100644 EM-placement/fitted_model/7db6_e.fasta delete mode 100644 EM-placement/fitted_model/rcsb_pdb_7DB6.fasta delete mode 100644 EM-placement/log_with_master_code delete mode 100644 EM-placement/output_table_docking_master_code delete mode 100644 EM-placement/test_melatonin_receptor_D_subunit_subsphere.phil Updating 'probe': At revision 120. Already up to date. Already up to date. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master Performing actions: cleanup hot update base build Installing base packages using: python modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: scons ===== Downloading https://gitcdn.link/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: HTTP Error 500: Internal Server Error ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules\dials: git checkout dials-2.2 ===== Running in modules\dials: git branch --set-upstream-to=origin/dials-2.2 dials-2.2 Existing non-git directory -- don't know what to do. skipping: eigen ===== Running in modules\voyager_regression: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert Existing non-git directory -- don't know what to do. skipping: reduce Existing non-git directory -- don't know what to do. skipping: ccp4io ===== Running in modules\phenix_dev_doc: git pull --rebase ===== Running in modules\amber_library: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1