06/05/2022 6:00:02.45 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 103k 100 103k 0 0 517k 0 --:--:-- --:--:-- --:--:-- 519k 06/05/2022 6:00:02.98 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. From https://github.com/dials/dials + 19d500895...b22df3bbc dials-3.9rc -> origin/dials-3.9rc (forced update) ae299e6c7..c645ecc62 main -> origin/main * [new branch] raise_unhandled -> origin/raise_unhandled * [new branch] rbs-non-primitive -> origin/rbs-non-primitive Auto packing the repository in background for optimum performance. See "git help gc" for manual housekeeping. Already up to date. Your branch is up to date with 'origin/dials-2.2'. Already on 'dials-2.2' Branch 'dials-2.2' set up to track remote branch 'dials-2.2' from 'origin'. From https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/voyager_regression d019347..a6461bf master -> origin/master * [new branch] revert-d0193472 -> origin/revert-d0193472 Updating d019347..a6461bf Fast-forward Isostructure/1qiv/1qiv.phil | 7 +++ Isostructure/1qiv/tst_1qiv_isostructure.py | 67 +++++++++++++++++++++++++++++ Isostructure/2f6f/isostructure_2f6f.phil | 11 +++++ Isostructure/2f6f/tst_2f6f_isostructure.py | 68 ++++++++++++++++++++++++++++++ Isostructure/2trh/isostructure_2trh.phil | 6 +++ Isostructure/2trh/tst_2trh_isostructure.py | 68 ++++++++++++++++++++++++++++++ Isostructure/3mwo/iso.phil | 3 ++ Isostructure/3mwo/tst_3mwo_isostructure.py | 67 +++++++++++++++++++++++++++++ run_tests.py | 18 ++++---- 9 files changed, 306 insertions(+), 9 deletions(-) create mode 100644 Isostructure/1qiv/1qiv.phil create mode 100644 Isostructure/1qiv/tst_1qiv_isostructure.py create mode 100644 Isostructure/2f6f/isostructure_2f6f.phil create mode 100644 Isostructure/2f6f/tst_2f6f_isostructure.py create mode 100644 Isostructure/2trh/isostructure_2trh.phil create mode 100644 Isostructure/2trh/tst_2trh_isostructure.py create mode 100644 Isostructure/3mwo/iso.phil create mode 100644 Isostructure/3mwo/tst_3mwo_isostructure.py Updating 'probe': At revision 129. Already up to date. Already up to date. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master Performing actions: cleanup hot update base build Installing base packages using: C:\Python27amd64\python.exe modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: scons ===== Downloading https://gitcdn.link/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: HTTP Error 500: Internal Server Error ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules\dials: git checkout dials-2.2 ===== Running in modules\dials: git branch --set-upstream-to=origin/dials-2.2 dials-2.2 Existing non-git directory -- don't know what to do. skipping: eigen ===== Running in modules\voyager_regression: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert Existing non-git directory -- don't know what to do. skipping: reduce Existing non-git directory -- don't know what to do. skipping: ccp4io ===== Running in modules\phenix_dev_doc: git pull --rebase ===== Running in modules\amber_library: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1