02/08/2022 6:00:01.77 Get bootstrap.py % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 103k 100 103k 0 0 391k 0 --:--:-- --:--:-- --:--:-- 392k 02/08/2022 6:00:02.24 C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty dist /MIR /COPYALL 1>nul ) & rmdir /S /Q dist\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tests /MIR /COPYALL 1>nul ) & rmdir /S /Q tests\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty doc /MIR /COPYALL 1>nul ) & rmdir /S /Q doc\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base /MIR /COPYALL 1>nul ) & rmdir /S /Q base\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty base_tmp /MIR /COPYALL 1>nul ) & rmdir /S /Q base_tmp\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty build /MIR /COPYALL 1>nul ) & rmdir /S /Q build\ & ) The system cannot find the file specified. C:\Users\phaserbuilder\NightlyBuilds\PhenixVC2008\x64\Current>((ROBOCOPY empty conda_base /MIR /COPYALL 1>nul ) & rmdir /S /Q conda_base\ & ) The system cannot find the file specified. From https://github.com/dials/dials + 05700fdb0...0c65a12d5 dials-3.10rc -> origin/dials-3.10rc (forced update) * [new branch] export_mtz_handle_shared_models -> origin/export_mtz_handle_shared_models Already up to date. Your branch is up to date with 'origin/dials-2.2'. Already on 'dials-2.2' Branch 'dials-2.2' set up to track remote branch 'dials-2.2' from 'origin'. From https://gitlab.developers.cam.ac.uk/scm/haematology/readgroup/voyager_regression 42fcdbe..439a5e3 master -> origin/master Updating 42fcdbe..439a5e3 Fast-forward .../Q9H790_AFmodels/AF-Q9H790-F1-model_v1.pdb | 3039 ++++++++++++++++++++ .../Q9H790_AFmodels/Q9H790_model_1_rank_4.pdb | 3004 +++++++++++++++++++ .../Q9H790_AFmodels/Q9H790_model_2_rank_5.pdb | 3008 +++++++++++++++++++ .../Q9H790_AFmodels/Q9H790_model_3_rank_1.pdb | 3006 +++++++++++++++++++ .../Q9H790_AFmodels/Q9H790_model_4_rank_3.pdb | 3002 +++++++++++++++++++ .../Q9H790_AFmodels/Q9H790_model_5_rank_2.pdb | 3003 +++++++++++++++++++ CASP_Rel_eLLG/Q9H790/readme_case_Q9H790 | 6 + CASP_Rel_eLLG/Q9H790/sample.csv | 7 + CASP_Rel_eLLG/Q9H790/targets/7lw7A.pdb | 2230 ++++++++++++++ CASP_Rel_eLLG/Q9H790/tst_casp_rel_ellg_Q9H790.py | 87 + CASP_Rel_eLLG/R1030-D2/readme_case_R1030D2 | 1 + CASP_Rel_eLLG/R1030-D2/tst_casp_rel_ellg_1030.py | 9 +- CASP_Rel_eLLG/T1024-D1/readme_case_T1024D1 | 1 + CASP_Rel_eLLG/T1024-D1/tst_casp_rel_ellg_1024.py | 11 +- CASP_Rel_eLLG/T1038-D2/readme_case_t1038d2 | 1 + CASP_Rel_eLLG/T1038-D2/test1038.phil | 23 - CASP_Rel_eLLG/T1038-D2/tst_casp_rel_ellg_1038.py | 11 +- CASP_Rel_eLLG/T1038-D2/voyager_strategy.log | 320 --- run_tests.py | 3 +- 19 files changed, 20420 insertions(+), 352 deletions(-) create mode 100644 CASP_Rel_eLLG/Q9H790/Q9H790_AFmodels/AF-Q9H790-F1-model_v1.pdb create mode 100644 CASP_Rel_eLLG/Q9H790/Q9H790_AFmodels/Q9H790_model_1_rank_4.pdb create mode 100644 CASP_Rel_eLLG/Q9H790/Q9H790_AFmodels/Q9H790_model_2_rank_5.pdb create mode 100644 CASP_Rel_eLLG/Q9H790/Q9H790_AFmodels/Q9H790_model_3_rank_1.pdb create mode 100644 CASP_Rel_eLLG/Q9H790/Q9H790_AFmodels/Q9H790_model_4_rank_3.pdb create mode 100644 CASP_Rel_eLLG/Q9H790/Q9H790_AFmodels/Q9H790_model_5_rank_2.pdb create mode 100644 CASP_Rel_eLLG/Q9H790/readme_case_Q9H790 create mode 100644 CASP_Rel_eLLG/Q9H790/sample.csv create mode 100644 CASP_Rel_eLLG/Q9H790/targets/7lw7A.pdb create mode 100644 CASP_Rel_eLLG/Q9H790/tst_casp_rel_ellg_Q9H790.py delete mode 100644 CASP_Rel_eLLG/T1038-D2/test1038.phil delete mode 100644 CASP_Rel_eLLG/T1038-D2/voyager_strategy.log Updating 'probe': At revision 129. Already up to date. Already up to date. There is no tracking information for the current branch. Please specify which branch you want to rebase against. See git-pull(1) for details. git pull If you wish to set tracking information for this branch you can do so with: git branch --set-upstream-to=origin/ master Performing actions: cleanup hot update base build Installing base packages using: C:\Python27amd64\python.exe modules\cctbx_project\libtbx\auto_build\install_conda.py --builder=phenix --install_conda --python=27 ===== Running in .: deleting dist, tests, doc, tmp, base, base_tmp, build, conda_base Existing non-git directory -- don't know what to do. skipping: scons ===== Downloading https://gitcdn.link/repo/dials/dependencies/dials-1.13/msgpack-3.1.1.tar.gz: HTTP Error 500: Internal Server Error ===== Running in modules: extracting files from msgpack-3.1.1.tar.gz ===== Running in modules\dials: git pull --rebase ===== Running in modules\dials: git checkout dials-2.2 ===== Running in modules\dials: git branch --set-upstream-to=origin/dials-2.2 dials-2.2 Existing non-git directory -- don't know what to do. skipping: eigen ===== Running in modules\voyager_regression: git pull --rebase ===== Running in modules: svn update probe --non-interactive --trust-server-cert Existing non-git directory -- don't know what to do. skipping: reduce Existing non-git directory -- don't know what to do. skipping: ccp4io ===== Running in modules\phenix_dev_doc: git pull --rebase ===== Running in modules\amber_library: git pull --rebase Existing non-git directory -- don't know what to do. skipping: ccp4io_adaptbx ===== Running in modules\solve_resolve: git pull --rebase Process failed with return code 1